Job Description Q47153 Confidence 100.00% Date Thu Jan 5 12:36:28 GMT 2012 Rank 1 Aligned Residues 340 % Identity 32% Template c3a5iB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:flagellar biosynthesis protein flha; PDBTitle: structure of the cytoplasmic domain of flha Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	Q	Q	V	S	W	E	T	I	P	L	I	E	P	I	S	L	S	L	G	Y	K	L	V	A	L	V	D	K	A	Q	G	N	P	L	T	Q	R	I	R	G	V	R	Q	V	I	S	D	G	N	G	V	L	L	P	E	I	R	I	R	E	N	F	R	L	K	P	S	Q	Y	A	I	F	I	N	G	I	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	V	V	E	A	T	W	N	D	V	Q	L	E	D	S	L	G	M	E	V	G	Y	R	L	I	P	M	V	D	F	Q	Q	D	G	E	L	L	G	R	I	R	S	I	R	K	K	F	A	Q	D	M	G	F	L	P	P	V	V	H	I	R	D	N	M	D	L	Q	P	A	R	Y	R	I	L	M	K	G	V	E	I
Template Known Secondary structure				S				G	G	G						S							G	G	G	T	T	T	T		S	S	S																				S	S											T	T	S		T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	A	D	I	P	A	D	K	L	M	A	L	P	S	S	E	T	Y	G	E	I	D	G	V	Q	G	N	D	P	A	Y	G	M	P	V	T	W	I	Q	A	A	Q	K	A	K	A	L	N	M	G	Y	Q	V	I	D	S	A	S	V	I	A	T	H	V	N	K	I	V	R	S	Y	I	P	D	L	F	N	Y	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	S	G	D	A	Y	P	G	R	W	L	A	I	N	P	G	T	A	A	G	T	L	P	G	E	K	T	V	D	P	A	F	G	L	D	A	I	W	I	E	S	A	L	K	E	Q	A	Q	I	Q	G	F	T	V	V	E	A	S	T	V	V	A	T	H	L	N	H	L	I	G	Q	F	S	A	E	L	F	G	R	Q
Template Known Secondary structure								T	T								S	S	S					S	S						S	S	S									G	G	G							T	T
Template Predicted Secondary structure
Template SS confidence
		428	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.		.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		D	I	T	Q	L	H	N	R	L	S	S	T	A	P	R	L	A	E	D	L	.	S	A	A	L	N	Y	S	Q	L	L	K	V	Y	R	A	L	L	T	E	G	V	S	L	R	D	I	V	T	I	A	T	V	L	V	A	S	S	T	V	T	K	D	H	I	L	L	A	A	D	V	R	L	A	L	R	R	S	I	T
Query Conservation																						.
Alig confidence																						.
Template Conservation
Template Sequence		E	A	Q	Q	L	L	D	R	V	S	Q	E	M	P	K	L	T	E	D	L	V	P	G	V	V	T	L	T	T	L	H	K	V	L	Q	N	L	L	A	E	K	V	P	I	R	D	M	R	T	I	L	E	T	L	A	E	H	A	P	L	Q	S	D	P	H	E	L	T	A	V	V	R	V	A	L	G	R	A	I	T
Template Known Secondary structure												T	T							T						S															T	T																	G	G	G															T
Template Predicted Secondary structure
Template SS confidence
		508	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.
		468	.	470	.	.		.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		H	P	F	V	R	.	K	Q	E	L	T	V	Y	T	L	N	N	E	L	E	N	L	L	T	N	V	V	N	Q	A	Q	Q	G	G	K	V	M	L	D	S	V	P	V	D	P	N	M	L	N	Q	F	Q	S	T	M	P	Q	V	K	E	Q	M	K	A	A	G	K	D	P	V	L	L	V	P	P	Q	L	R	P	L
Query Conservation							.
Alig confidence							.																											.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	Q	W	F	P	G	N	E	E	V	Q	V	I	G	L	D	T	A	L	E	R	L	L	L	Q	A	L	Q	G	G	G	G	.	.	.	.	.	.	.	.	.	.	L	E	P	G	L	A	D	R	L	L	A	Q	T	Q	E	A	L	S	R	Q	E	M	L	G	A	P	P	V	L	L	V	N	H	A	L	R	P	L
Template Known Secondary structure					S		S	S																						T		S		.	.	.	.	.	.	.	.	.	.																								T			S						T	T	T
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.
Template SS confidence
		588	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.											620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.
		547	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	R	Y	A	R	L	F	A	P	G	L	H	V	L	S	Y	N	E	V	P	D	E	L	E	L	K	I	M	G	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	S	R	F	L	R	R	S	L	P	Q	L	V	V	L	S	N	L	E	L	S	D	N	R	H	I	R	M	T	A	T	I
Template Known Secondary structure								T	T		T	T						T	T	T	S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		658	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions