Job Description P0AFU4 Confidence 98.12% Date Thu Jan 5 11:27:17 GMT 2012 Rank 210 Aligned Residues 202 % Identity 8% Template c3te6A_ PDB info PDB header:gene regulation Chain: A: PDB Molecule:regulatory protein sir3; PDBTitle: crystal structure of the s. cerevisiae sir3 aaa+ domain Resolution 2.80 Å

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		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180						.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.						.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure																													.	.	.	.	.																			.	.	.	.	.
Query SS confidence																													.	.	.	.	.																			.	.	.	.	.
Query Sequence		A	Q	S	D	V	S	V	L	I	N	G	Q	S	G	T	G	K	E	I	F	A	Q	A	I	H	N	A	.	.	.	.	.	S	P	R	N	S	K	P	F	I	A	I	N	C	G	A	L	P	E	.	.	.	.	.	Q	L	L	E	S	E	L	F	G	H	A	R	G	A	F	T	G	A	V	S	N	R	E	G	L
Query Conservation																													.	.	.	.	.																			.	.	.	.	.
Alig confidence																													.	.	.	.	.																			.	.	.	.	.
Template Conservation
Template Sequence		S	S	Q	N	K	L	F	Y	I	T	N	A	D	D	S	T	K	F	Q	L	V	N	D	V	X	D	E	L	I	T	S	S	A	R	K	E	L	P	I	F	D	Y	I	H	I	D	A	L	E	L	X	D	A	L	Y	E	K	I	W	F	A	I	S	K	E	N	G	D	I	S	L	E	A	L	N	F	Y	I	T	N
Template Known Secondary structure		T	T												S																	T	T	T	T	T	S	S										T	T															S
Template Predicted Secondary structure
Template SS confidence
		569	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.
		224	.	.	.	.	.	230	.			.	.	.	.	.	.	.	.	240		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.		.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.										.																																							.
Query SS confidence										.	.										.																																							.
Query Sequence		F	Q	A	A	E	G	G	T	.	.	L	F	L	D	E	I	G	D	M	.	P	A	P	L	Q	V	K	L	L	R	V	L	Q	E	R	K	V	R	P	L	G	S	N	R	D	I	D	I	N	V	R	I	I	S	A	T	H	R	.	D	L	P	K	A	M	A	R	G	E	F	R	E	D	L	Y	Y	R	L	N	V
Query Conservation										.	.										.																																							.
Alig confidence										.	.										.													.	.	.	.	.	.	.	.	.	.	.																.						.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Template Sequence		V	P	K	A	K	K	R	K	T	L	I	L	I	Q	N	P	E	N	L	L	S	E	K	I	L	Q	Y	F	E	K	W	I	.	.	.	.	.	.	.	.	.	.	.	S	S	K	N	S	K	L	S	I	I	C	V	G	G	H	N	V	T	I	R	E	.	.	.	.	Q	I	N	I	X	P	S	L	K	A	H	F
Template Known Secondary structure		S		G	G	G	S											S	S	S			T											.	.	.	.	.	.	.	.	.	.	.			S	S											S	S						.	.	.	.				T						T	T
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Template SS confidence
		653	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.												.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.					.	.	.	.	710	.	.	.	.	.	.	.
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.																					.	.	.	.	.	.	.	340	.	.	.	.	.	.	.			.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Query Sequence		V	S	L	K	I	P	A	L	A	E	R	T	E	D	I	P	L	L	A	N	H	L	L	R	Q	A	A	E	R	H	K	P	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	R	A	F	S	T	D	A	M	K	R	L	M	T	A	.	.	S	W	P	G	N	V	R	Q	L	V
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Alig confidence											.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation											.	.
Template Sequence		T	E	I	K	L	N	K	V	D	.	.	K	N	E	L	Q	Q	X	I	I	T	R	L	K	S	L	L	K	P	F	H	V	K	V	N	D	K	K	E	X	T	I	Y	N	N	I	P	D	N	V	I	V	I	N	H	K	I	N	N	K	I	T	Q	L	I	A	K	N	V	A	N	V	S	G	S	T	E	K	A	F
Template Known Secondary structure											.	.																									T	T											T	T																										S
Template Predicted Secondary structure											.	.
Template SS confidence
		718	.	720	.	.	.	.	.	.			.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	I	E	Q	C	V	A	L	T	S	S	P	V	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	I	C	E	A	A	V	E	I	S	K	K	D	F	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		804	.	.	.	.	.	810	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions