Job Description P0AFU4 Confidence 99.70% Date Thu Jan 5 11:27:17 GMT 2012 Rank 123 Aligned Residues 246 % Identity 17% Template c3pvsA_ PDB info PDB header:recombination Chain: A: PDB Molecule:replication-associated recombination protein a; PDBTitle: structure and biochemical activities of escherichia coli mgsa Resolution 2.50 Å

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		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		E	Q	S	A	P	A	T	D	E	R	W	R	E	A	I	V	T	R	S	P	L	M	L	R	L	L	E	Q	A	R	L	V	A	Q	S	D	V	S	.	V	L	I	N	G	Q	S	G	T	G	K	E	I	F	A	Q	A	I	H	N	A	S	P	R	N	S	K	P	F	I	A	I	N	C	G	A	L	P	E	Q	L
Query Conservation																																								.
Alig confidence																																								.																							.	.	.
Template Conservation																																																															.	.	.
Template Sequence		Q	P	L	A	A	R	M	R	P	E	N	L	A	Q	Y	I	G	Q	Q	H	L	L	A	A	G	K	P	L	P	R	A	I	E	A	G	H	L	H	S	M	I	L	W	G	P	P	G	T	G	K	T	T	L	A	E	V	I	A	R	Y	A	.	.	.	N	A	D	V	E	R	I	S	A	V	T	S	G	V	K	E
Template Known Secondary structure								T				S	T	T	T			S						S	T	T	S									T										S	T	T	S	S												T	.	.	.	T								T	T	T
Template Predicted Secondary structure																																																															.	.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.				.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	S	E	L	F	G	H	A	R	G	A	F	T	G	A	V	S	N	R	E	G	L	F	Q	A	A	E	G	G	T	L	F	L	D	E	I	G	D	M	P	A	P	L	Q	V	K	L	L	R	V	L	Q	E	R	K	V	R	P	L	G	S	N	R	D	I	D	I	N	V	R	I	I	S	A	T	H	R	D	L
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	R	E	A	I	.	.	.	.	.	.	.	.	.	.	.	.	E	R	A	R	Q	N	R	N	A	G	R	R	T	I	L	F	V	D	E	V	H	R	F	A	.	.	.	.	.	.	F	L	P	H	I	E	D	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	I	T	F	I	G	A	T	T	E	N	P
Template Known Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.									T	T									T	T	T				.	.	.	.	.	.							T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.								S	S		G
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		91	.	.	.	.													.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.							120	.	.	.	.	.	.	.	.														.	130	.	.	.	.	.	.	.	.	.
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure
Query SS confidence
Query Sequence		P	K	A	M	A	R	G	E	F	R	E	D	L	Y	Y	R	L	N	V	V	S	L	K	I	P	A	L	A	E	R	T	E	D	I	P	L	L	A	N	H	L	L	R	Q	A	A	E	R	H	K	P	F	V	R	A	F	S	T	D	A	M	K	R	L	M	T	A	S	W	P	G	N	V	R	Q	L	V	N	V	I
Query Conservation
Alig confidence					.	.	.	.	.																			.	.	.	.																																							.
Template Conservation					.	.	.	.	.																			.	.	.	.																																							.
Template Sequence		S	F	E	.	.	.	.	.	L	N	S	A	L	L	S	R	A	R	V	Y	L	L	K	S	L	S	.	.	.	.	T	E	D	I	E	Q	V	L	T	Q	A	M	E	D	K	T	R	G	Y	G	G	Q	D	I	V	L	P	D	E	T	R	R	A	I	A	E	L	V	.	N	G	D	A	R	R	A	L	N	T	L
Template Known Secondary structure		G	G	S	.	.	.	.	.	S						T	T											.	.	.	.															T	T	T	S	S	T	T	S	S																.		S
Template Predicted Secondary structure					.	.	.	.	.																			.	.	.	.																																							.
Template SS confidence
		146	.	.						.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.					.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.		.	.	.	.	.	210	.	.	.	.	.
		361	.	.	.	.	.	.	.	.	370	.						.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.
Query SS confidence													.	.	.	.	.
Query Sequence		E	Q	C	V	A	L	T	S	S	P	V	.	.	.	.	.	I	S	D	A	L	V	E	Q	A	L	E	G	E	N	T	A	L	P	T	F	V	E	A	R	N	Q	F	E	L	N	Y	L	R	K	L	L	Q	I	T	K	G	N	V	T	H	A	A
Query Conservation													.	.	.	.	.
Alig confidence													.	.	.	.	.																			.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.
Template Sequence		E	M	M	A	D	M	A	E	V	D	D	S	G	K	R	V	L	K	P	E	L	L	T	E	I	A	G	E	R	S	A	R	K	G	.	.	.	.	.	.	.	D	R	F	Y	D	L	I	S	A	L	H	K	S	V	R	G	S	A	P	D	A	A
Template Known Secondary structure								S		B		T	T	S														T								.	.	.	.	.	.	.																T	T
Template Predicted Secondary structure																																				.	.	.	.	.	.	.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.								250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions