Job Description P0AFU4 Confidence 99.67% Date Thu Jan 5 11:27:17 GMT 2012 Rank 124 Aligned Residues 232 % Identity 21% Template c3k1jA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent protease lon; PDBTitle: crystal structure of lon protease from thermococcus onnurineus na1 Resolution 2.00 Å

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		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.															.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Query Sequence		R	L	L	E	Q	A	R	L	V	A	Q	S	D	V	S	V	L	I	N	G	Q	S	G	T	G	K	E	I	F	A	Q	A	I	H	N	A	S	P	R	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	K	P	F	I	A	I	N	C	G	A	L	P	E	Q	L	L	.	.	.	.	.	.	.	.	.
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	A	V	E	V	I	K	T	A	A	N	Q	K	R	H	V	L	L	I	G	E	P	G	T	G	K	S	M	L	G	Q	A	M	A	E	L	L	P	T	E	T	L	E	D	I	L	V	F	P	N	P	E	D	E	N	M	P	R	I	K	T	V	P	A	C	Q	G	R	R	I	V	E	K	Y	R	E	K	A	K	S
Template Known Secondary structure													T	T									T	T	S	S											T	S			S	S										T	T		T	T	S								T	T
Template Predicted Secondary structure
Template SS confidence
		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
																														202	.	.	.	.	.	.	.	210	.					.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	S	E	L	F	G	H	A	R	G	.	.	.	.	A	F	T	G	A	V	S	N	R	E	G	L	F	Q	A	A	E	G	G	T	L	F	L	D	E	I	G	D	M	P	A	P	L	Q	V	K	L	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.
Template Conservation
Template Sequence		Q	E	S	V	L	V	P	K	L	L	V	D	N	C	G	R	T	K	A	P	F	I	D	A	T	G	A	H	A	G	A	L	L	G	D	V	R	H	D	P	F	L	G	T	P	A	H	E	R	V	E	P	G	M	I	H	R	A	H	K	G	V	L	F	I	D	E	I	A	T	L	S	L	K	M	Q	Q	S	L	L
Template Known Secondary structure			T												T	T		S	S							T	T																				G	G	G	G									T	T	T	S					T	T	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.											.	.	.	.	270	.	.	.	.	.	.	.	.		.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.														.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.														.
Query Sequence		R	V	L	Q	E	R	K	V	R	P	L	G	S	N	R	D	.	.	.	.	.	.	.	.	.	.	I	D	I	N	V	R	I	I	S	A	T	H	R	.	D	L	P	K	A	M	A	R	G	E	F	R	E	D	L	Y	Y	R	L	N	V	V	S	L	K	I	P	A	L	A	E	R	T	E	D	I	P	L	L	A
Query Conservation																		.	.	.	.	.	.	.	.	.	.														.
Alig confidence																		.	.	.	.	.	.	.	.	.	.														.
Template Conservation
Template Sequence		T	A	M	Q	E	K	K	F	P	I	T	G	Q	S	E	M	S	S	G	A	M	V	R	T	E	P	V	P	C	D	F	V	L	V	A	A	G	N	L	D	T	V	D	K	M	H	P	A	L	R	S	R	I	R	G	Y	G	Y	E	V	Y	M	R	T	T	M	P	D	T	I	E	N	R	R	K	L	V	Q	F	V
Template Known Secondary structure							S					B		S		T	T	S	G	G	G	G		B		S																				S												S							S
Template Predicted Secondary structure
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.										.	350	.	.	.	.	.	.	.	.	.	360	.	.	.				.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.																.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.																.	.	.
Query Sequence		N	H	L	L	R	Q	A	A	E	R	H	K	P	F	V	R	A	F	S	T	D	A	M	K	R	L	M	T	A	S	.	.	.	.	.	.	.	.	.	W	P	G	N	V	R	Q	L	V	N	V	I	E	Q	C	.	.	.	V	A	L	T	S	S	P	V	I	S	D	A	L	V	E	Q	A	L
Query Conservation																																.	.	.	.	.	.	.	.	.																.	.	.
Alig confidence								.	.	.	.	.																				.	.	.	.	.	.	.	.	.																.	.	.
Template Conservation								.	.	.	.	.
Template Sequence		A	Q	E	V	K	R	.	.	.	.	.	D	G	K	I	P	H	F	T	K	E	A	V	E	E	I	V	R	E	A	Q	K	R	A	G	R	K	G	H	L	T	L	R	L	R	D	L	G	G	I	V	R	A	A	G	D	I	A	V	K	K	G	K	K	Y	V	E	R	E	D	V	I	E	A	V
Template Known Secondary structure								.	.	.	.	.			S	S			B	B														T	T		S	T	T																							T	T		S	S	B
Template Predicted Secondary structure								.	.	.	.	.
Template SS confidence
		340	.	.	.	.	.						.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions