Job Description P0AFU4 Confidence 99.46% Date Thu Jan 5 11:27:17 GMT 2012 Rank 141 Aligned Residues 230 % Identity 17% Template c3hteC_ PDB info PDB header:motor protein Chain: C: PDB Molecule:atp-dependent clp protease atp-binding subunit clpx; PDBTitle: crystal structure of nucleotide-free hexameric clpx Resolution 4.03 Å

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		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.					.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.																																														.
Query SS confidence																				.	.	.	.																																														.
Query Sequence		E	A	I	V	T	R	S	P	L	M	L	R	L	L	E	Q	A	R	.	.	.	.	L	V	A	Q	S	D	V	S	V	L	I	N	G	Q	S	G	T	G	K	E	I	F	A	Q	A	I	H	N	A	S	P	R	N	S	K	P	F	I	A	I	N	C	G	A	L	.	P	E	Q	L	L	E	S	E	L	F	G	H
Query Conservation																				.	.	.	.																																														.
Alig confidence																				.	.	.	.																															.	.	.													.
Template Conservation																																																						.	.	.
Template Sequence		D	Y	V	I	G	Q	E	Q	A	K	K	V	L	A	V	A	V	Y	N	H	Y	K	R	L	R	N	G	K	S	N	I	L	L	I	G	P	T	G	S	G	K	T	L	L	A	E	T	L	A	R	L	L	.	.	.	D	V	P	F	T	M	A	D	A	T	T	L	E	D	V	E	N	I	I	Q	K	L	L	Q	K
Template Known Secondary structure		T	T	S		S																																T	T	S	S											T	T	.	.	.	T								G	G	G			T	T	T									T
Template Predicted Secondary structure																																																						.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.				.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240			.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.										260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.																				.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.																				.	.	.	.	.	.	.	.	.
Query Sequence		A	R	G	A	F	T	G	A	V	S	N	R	E	G	L	F	Q	A	A	E	G	G	T	L	F	L	D	E	I	G	D	M	.	.	P	A	P	L	Q	V	K	L	L	R	V	L	Q	E	R	K	V	R	P	.	.	.	.	.	.	.	.	.	L	G	S	N	R	D	I	D	I	N	V	R	I	I	S	A	T	H
Query Conservation																																		.	.																				.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.																			.	.																				.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	D	Y	.	.	.	.	.	.	.	.	.	.	.	D	V	Q	K	A	Q	R	G	I	V	Y	I	D	Q	I	D	K	I	S	R	G	E	G	V	Q	Q	A	L	L	K	L	I	E	G	V	D	T	S	K	I	L	F	I	C	G	G	A	F	A	G	L	D	K	V	I	S	H	R	V	S	E	G	E	L	L	A
Template Known Secondary structure		T	T	T	.	.	.	.	.	.	.	.	.	.	.							T								G	G	G	G																			T	T	S	S									T	T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		169	170	.												.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.					.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure																																									.	.	.	.																																					.
Query SS confidence																																									.	.	.	.																																					.
Query Sequence		R	D	L	P	K	A	M	A	R	G	E	F	R	E	D	L	Y	Y	R	L	N	V	V	S	L	K	I	P	A	L	A	E	R	T	E	D	I	P	L	.	.	.	.	L	A	N	H	L	L	R	Q	A	A	E	R	H	K	P	F	V	R	A	F	S	T	D	A	M	K	R	L	M	T	A	S	W	P	G	N	.
Query Conservation																																									.	.	.	.																																					.
Alig confidence																																									.	.	.	.																			.																		.
Template Conservation																																																															.
Template Sequence		Q	V	E	P	E	D	L	I	K	F	G	L	I	P	E	F	I	G	R	L	P	V	V	A	T	L	N	E	L	S	E	E	A	L	I	Q	I	L	K	E	P	K	N	A	L	T	K	Q	Y	Q	A	L	F	N	L	E	G	V	D	L	E	.	F	R	D	E	A	L	D	A	I	A	K	K	A	M	A	R	K	T
Template Known Secondary structure		T										T							T	T									S												S	S	T	T													T	T					.																T	T
Template Predicted Secondary structure																																																															.
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
			353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	V	R	Q	L	V	N	V	I	E	Q	C	V	A	L	T	S	S	P	V	I	S	D	A	L	V	E
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		G	A	R	G	L	R	S	I	V	E	A	A	L	L	D	T	M	Y	D	L	P	S	M	E	D	V	E
Template Known Secondary structure		T	T																	S	S	T	T	S			S
Template Predicted Secondary structure
Template SS confidence
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions