Job Description P0AFU4 Confidence 99.84% Date Thu Jan 5 11:27:17 GMT 2012 Rank 69 Aligned Residues 117 % Identity 23% Template c3cnbC_ PDB info PDB header:dna binding protein Chain: C: PDB Molecule:dna-binding response regulator, merr family; PDBTitle: crystal structure of signal receiver domain of dna binding response2 regulator protein (merr) from colwellia psychrerythraea 34h Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.			.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.			.	.	.	.	.	.	80	.	.
Predicted Secondary structure																								.	.																																														.	.
Query SS confidence																								.	.																																														.	.
Query Sequence		H	L	L	L	V	D	D	D	P	G	L	L	K	L	L	G	L	R	L	T	S	E	.	.	G	Y	S	V	V	T	A	E	S	G	A	E	G	L	R	V	L	N	R	E	K	V	D	L	V	I	S	D	L	R	M	D	E	M	D	G	M	Q	L	F	A	E	I	Q	K	.	.	V	Q	P	G	M	P	V	I	I
Query Conservation																								.	.																																														.	.
Alig confidence																								.	.																																														.	.
Template Conservation
Template Sequence		S	I	L	I	I	E	D	D	K	E	F	A	D	M	L	T	Q	F	L	E	N	L	F	P	Y	A	K	I	K	I	A	Y	N	P	F	D	A	G	D	L	L	H	T	V	K	P	D	V	V	M	L	D	L	M	M	V	G	M	D	G	F	S	I	C	H	R	I	K	S	T	P	A	T	A	N	I	I	V	I	A
Template Known Secondary structure								S																	T	T	S							S											T			S						T	T		T	T	S											T	S	T	T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	A	H	G	S	I	P	D	A	V	A	A	T	Q	Q	G	V	F	S	F	L	T	K	P	V	D	K	D	A	L	Y	Q	A	I	D	D	A	L	E	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	T	G	A	L	T	D	D	N	V	S	R	I	V	A	L	G	A	E	T	C	F	G	K	P	L	N	F	T	L	L	E	K	T	I	K	Q	L	V	E	Q
Template Known Secondary structure				S	S												T	T		S					S	S
Template Predicted Secondary structure
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions