Job Description P0AFU4 Confidence 99.89% Date Thu Jan 5 11:27:17 GMT 2012 Rank 21 Aligned Residues 125 % Identity 30% Template c3cfyA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative luxo repressor protein; PDBTitle: crystal structure of signal receiver domain of putative luxo2 repressor protein from vibrio parahaemolyticus Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	H	L	L	L	V	D	D	D	P	G	L	L	K	L	L	G	L	R	L	T	S	E	G	Y	S	V	V	T	A	E	S	G	A	E	G	L	R	V	L	N	R	E	K	V	D	L	V	I	S	D	L	R	M	D	E	M	D	G	M	Q	L	F	A	E	I	Q	K	V	Q	P	G	M	P	V	I	I	L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	P	R	V	L	L	V	E	D	S	T	S	L	A	I	L	Y	K	Q	Y	V	K	D	E	P	Y	D	I	F	H	V	E	T	G	R	D	A	I	Q	F	I	E	R	S	K	P	Q	L	I	I	L	D	L	K	L	P	D	M	S	G	E	D	V	L	D	W	I	N	Q	N	D	I	P	T	S	V	I	I	A	T
Template Known Secondary structure										S		T	T									T	T	T	S	S	S						S	S														S						S	B		S	S	S	B											T	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	H	G	S	I	P	D	A	V	A	A	T	Q	Q	G	V	F	S	F	L	T	K	P	V	D	K	D	A	L	Y	Q	A	I	D	D	A	L	E	Q	S	A	P	A	T	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	H	G	S	V	D	L	A	V	N	L	I	Q	K	G	A	E	D	F	L	E	K	P	I	N	A	D	R	L	K	T	S	V	A	L	H	L	K	R	A	K	L	E	D	L
Template Known Secondary structure		S	S												T	T		S					S	S																						T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions