Job Description P0AFU4 Confidence 98.99% Date Thu Jan 5 11:27:17 GMT 2012 Rank 169 Aligned Residues 203 % Identity 24% Template c3cf1C_ PDB info PDB header:transport protein Chain: C: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: structure of p97/vcp in complex with adp/adp.alfx Resolution 4.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	S	D	V	S	V	L	I	N	G	Q	S	G	T	G	K	E	I	F	A	Q	A	I	H	N	A	S	P	R	N	S	K	P	F	I	A	I	N	C	G	A	L	P	E	Q	L	L	E	S	E	L	F	G	H	A	R	G	A	F	T	G	A	V	S	N	R	E	G	L	F	Q	A	A	E	G	G	T	L	F	L
Query Conservation
Alig confidence																														.	.	.									.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.									.	.	.	.	.	.	.	.	.
Template Sequence		T	P	S	K	G	V	L	F	Y	G	P	P	G	C	G	K	T	L	L	A	K	A	I	A	N	E	C	Q	.	.	.	A	N	F	I	S	I	K	G	.	.	.	.	.	.	.	.	.	P	E	L	L	T	M	W	F	G	E	S	E	A	N	V	R	E	I	F	D	K	A	R	Q	A	A	P	C	V	L	F	F
Template Known Secondary structure					S								T	T	S													T	T	.	.	.									.	.	.	.	.	.	.	.	.								T	T	T		T							T	T	T	T	T	T	T		S
Template Predicted Secondary structure																														.	.	.									.	.	.	.	.	.	.	.	.
Template SS confidence
		509	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.				.	.	.	540	.	.	.	.										.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.
		235	.	.	.	.	240	.	.	.															.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280				.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.
Query Sequence		D	E	I	G	D	M	P	A	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Q	V	K	L	L	R	V	L	Q	E	R	K	V	R	P	L	G	S	N	R	D	I	D	I	N	V	R	I	I	S	A	T	H	R	D	L	.	.	.	P	K	A	M	A	R	G	E	F	R	E	D	L	Y	Y	R	L
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.																		.	.	.											.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.
Template Sequence		D	E	L	D	S	I	A	K	A	R	G	G	N	I	G	D	G	G	G	A	A	D	R	V	I	N	Q	I	L	T	E	M	D	G	.	.	.	.	.	.	.	.	.	M	S	T	K	K	N	V	F	I	I	G	A	T	N	R	P	D	I	I	D	P	A	I	L	R	P	G	R	L	D	.	.	.	.	.	.	.
Template Known Secondary structure		S	S	G	G	G	G					T	T	T	T		S	S			S														S	.	.	.	.	.	.	.	.	.	S		T	T	S	S								S		G	G	G			G	G	G	T	S	T	T	T	S		.	.	.	.	.	.	.
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.
Template SS confidence
		577	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610										.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340		.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.									.
Predicted Secondary structure																																													.																												.	.	.	.	.	.	.	.
Query SS confidence																																													.																												.	.	.	.	.	.	.	.
Query Sequence		N	V	V	S	L	K	I	P	A	L	A	E	R	T	E	D	I	P	L	L	A	N	H	L	L	R	Q	A	A	E	R	H	K	P	F	V	R	A	F	S	T	D	A	.	M	K	R	L	M	T	A	S	W	P	G	N	V	R	Q	L	V	N	V	I	E	Q	C	V	A	L	T	.	.	.	.	.	.	.	.	S
Query Conservation																																													.																												.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.										.	.	.	.	.	.	.	.	.							.																												.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.										.	.	.	.	.	.	.	.	.
Template Sequence		Q	L	I	Y	I	P	L	P	D	E	K	S	R	V	A	.	.	.	.	I	L	K	A	N	L	R	K	S	.	.	.	.	.	.	.	.	.	P	V	A	K	D	V	D	L	E	F	L	A	K	M	T	N	G	F	S	G	A	D	L	T	E	I	C	Q	R	A	C	K	L	A	I	R	E	S	I	E	S	E	I
Template Known Secondary structure											T	T					.	.	.	.						T	T	T	S	.	.	.	.	.	.	.	.	.		B		S	S							T	T	T		S	S															T	T
Template Predicted Secondary structure																	.	.	.	.										.	.	.	.	.	.	.	.	.
Template SS confidence
		641	.	.	.	.	.	.	.	.	650	.	.	.	.	.					.	.	.	.	660	.	.	.	.										.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	V	I	S	D	A	L	V	E	Q	A	L	E	G	E	N	T	A	L	P	T	F	V	E	A	R	N	Q	F	E	L
Query Conservation
Alig confidence																									.	.
Template Conservation																									.	.
Template Sequence		V	P	E	I	R	R	D	H	F	E	E	A	M	R	F	A	R	R	S	V	S	D	N	.	.	D	I	R	K	Y	E	M
Template Known Secondary structure					B										T	T				S	S				.	.
Template Predicted Secondary structure																									.	.
Template SS confidence
		728	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750			.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions