Job Description P0AFU4 Confidence 98.60% Date Thu Jan 5 11:27:17 GMT 2012 Rank 196 Aligned Residues 197 % Identity 17% Template c2zamA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:vacuolar protein sorting-associating protein 4b; PDBTitle: crystal structure of mouse skd1/vps4b apo-form Resolution 3.50 Å

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		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150											.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.
Query Sequence		P	A	T	D	E	R	W	R	E	A	I	V	T	R	S	P	L	M	L	R	L	L	E	Q	A	.	.	.	.	.	.	.	.	.	.	R	L	V	A	Q	S	D	V	S	V	L	I	N	G	Q	S	G	T	G	K	E	I	F	A	Q	A	I	H	N	A	S	P	R	N	S	K	P	F	I	A	I	N	C	G	A
Query Conservation																											.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	E	R	P	N	V	K	W	S	D	V	A	G	L	E	G	A	K	E	A	L	K	E	A	V	I	L	P	I	K	F	P	H	L	F	T	G	K	R	T	P	W	R	G	I	L	L	F	G	P	P	G	T	G	K	S	Y	L	A	K	A	V	A	T	E	A	N	N	S	T	F	F	S	I	S	S	S	D	L	V
Template Known Secondary structure									G	G	G	S		S												T							G	G	G	S		S	S					S							S	T	T	S													T	T	T									S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.				.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.			.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure																																		.	.	.																				.	.
Query SS confidence																																		.	.	.																				.	.
Query Sequence		L	P	E	Q	L	L	E	S	E	L	F	G	H	A	R	G	A	F	T	G	A	V	S	N	R	E	G	L	F	Q	A	A	.	.	.	E	G	G	T	L	F	L	D	E	I	G	D	M	P	A	P	L	Q	V	.	.	K	L	L	R	V	L	Q	E	R	K	V	R	P	L	G	S	N	R	D	I	D	I	N	V
Query Conservation																																		.	.	.																				.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.																				.	.									.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.
Template Sequence		S	S	E	K	L	V	K	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	F	Q	L	A	R	E	N	K	P	S	I	I	F	I	D	E	I	D	S	S	E	A	A	R	R	I	K	T	E	F	L	V	Q	M	Q	G	.	.	.	.	.	.	.	.	V	G	V	D	N	D	G	I
Template Known Secondary structure					T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T		S							S																				T	.	.	.	.	.	.	.	.	S	S	S			T	T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.
Template SS confidence
		206	.	.	.	210	.	.	.																				.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250									.	.	.	.	.	.	.	.
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.		.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence		R	I	I	S	A	T	H	R	D	L	P	K	A	M	A	R	G	E	F	R	E	D	L	Y	Y	R	L	N	.	V	V	S	L	K	I	P	A	L	A	E	R	T	E	D	I	P	L	L	A	N	H	L	L	R	Q	A	A	E	R	H	K	P	F	V	R	A	F	S	T	D	A	M	K	R	L	M	T	A	S	W
Query Conservation																														.
Alig confidence										.	.	.	.	.	.	.														.															.	.	.	.							.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.																													.	.	.	.							.	.	.	.	.	.	.
Template Sequence		L	V	L	G	A	T	N	I	.	.	.	.	.	.	.	P	W	V	L	D	S	A	I	R	R	R	F	E	K	R	I	Y	I	P	L	P	E	A	H	A	R	A	A	.	.	.	.	M	F	R	L	H	L	.	.	.	.	.	.	.	G	S	T	Q	N	S	L	T	E	A	D	F	Q	E	L	G	R	K	T	D
Template Known Secondary structure								S		.	.	.	.	.	.	.		T	T	S									S										S						.	.	.	.							.	.	.	.	.	.	.	T	T			B													S
Template Predicted Secondary structure										.	.	.	.	.	.	.																													.	.	.	.							.	.	.	.	.	.	.
Template SS confidence
		273	.	.	.	.	.	.	280								.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.					.	310	.	.	.	.								.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	N	V	R	Q	L	V	N	V	I	E	Q	C	V	A	L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	Y	S	G	A	D	I	S	I	I	V	R	D	A	L	M	Q	P
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions