Job Description P0AFU4 Confidence 85.51% Date Thu Jan 5 11:27:17 GMT 2012 Rank 496 Aligned Residues 116 % Identity 10% Template c2z83A_ PDB info PDB header:viral protein Chain: A: PDB Molecule:helicase/nucleoside triphosphatase; PDBTitle: crystal structure of catalytic domain of japanese2 encephalitis virus ns3 helicase/nucleoside triphosphatase3 at a resolution 1.8 Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.		.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.				.	220	.	.	.	.	.
Predicted Secondary structure																				.																																															.	.	.								.	.	.	.	.
Query SS confidence																				.																																															.	.	.								.	.	.	.	.
Query Sequence		Q	S	D	V	S	V	L	I	N	G	Q	S	G	T	G	K	E	I	.	F	A	Q	A	I	H	N	A	S	P	R	N	S	K	P	F	I	A	I	N	C	G	A	L	P	E	Q	L	L	E	S	E	L	F	G	H	A	R	G	A	F	T	G	A	V	S	.	.	.	N	R	E	G	L	F	Q	.	.	.	.	.
Query Conservation																				.																																															.	.	.								.	.	.	.	.
Alig confidence																				.																																															.	.	.								.	.	.	.	.
Template Conservation
Template Sequence		R	K	R	Q	M	T	V	L	D	L	H	P	G	S	G	K	T	R	K	I	L	P	Q	I	I	K	D	A	I	Q	Q	R	L	R	T	A	V	L	A	P	T	R	V	V	A	A	E	M	A	E	A	L	R	G	L	P	V	R	Y	Q	T	G	N	E	I	V	D	V	M	C	H	A	T	L	T	H	R	L	M	S
Template Known Secondary structure		S	T	T									T	T	S		T	T	T	T												T	T									S											T	T	T	S										S															S
Template Predicted Secondary structure
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
				226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	A	A	E	G	G	T	L	F	L	D	E	I	G	D	M	P	A	P	L	Q	V	K	L	L	R	V	L	Q	E	R	K	V	R	P	L	G	S	N	R	D	I	D	I	N	V	R	I	I	S	A	T	H	R	D	L
Query Conservation		.	.
Alig confidence		.	.																													.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.
Template Sequence		P	N	V	P	N	Y	N	L	F	V	M	D	E	A	H	F	T	D	P	A	S	I	A	A	R	G	Y	I	A	T	.	.	.	.	.	.	.	.	.	.	K	V	E	L	G	E	A	A	A	I	F	M	T	A	T	P	P
Template Known Secondary structure								S					S	S	T	T			S													.	.	.	.	.	.	.	.	.	.				T	T	S								S	S		T
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.											.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions