Job Description P0AFU4 Confidence 98.70% Date Thu Jan 5 11:27:17 GMT 2012 Rank 190 Aligned Residues 200 % Identity 20% Template c2x8aA_ PDB info PDB header:nuclear protein Chain: A: PDB Molecule:nuclear valosin-containing protein-like; PDBTitle: human nuclear valosin containing protein like (nvl), c-2 terminal aaa-atpase domain Resolution 2.60 Å

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		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	S	D	V	S	V	L	I	N	G	Q	S	G	T	G	K	E	I	F	A	Q	A	I	H	N	A	S	P	R	N	S	K	P	F	I	A	I	N	C	G	A	L	P	E	Q	L	L	E	S	E	L	F	G	H	A	R	G	A	F	T	G	A	V	S	N	R	E	G	L	F	Q	A	A	E	G	G	T	L	F	L
Query Conservation
Alig confidence																														.	.	.																					.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.																					.	.	.	.	.	.	.	.	.
Template Sequence		V	T	P	A	G	V	L	L	A	G	P	P	G	C	G	K	T	L	L	A	K	A	V	A	N	E	S	G	.	.	.	L	N	F	I	S	V	K	G	P	E	L	L	N	M	Y	V	G	E	S	E	.	.	.	.	.	.	.	.	.	R	A	V	R	Q	V	F	Q	R	A	K	N	S	A	P	C	V	I	F	F
Template Known Secondary structure					S						S	S	T	T	S													T	T	.	.	.								T	T	T	T		S	S	T	T					.	.	.	.	.	.	.	.	.													T		S
Template Predicted Secondary structure																														.	.	.																					.	.	.	.	.	.	.	.	.
Template SS confidence
		613	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640				.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660										.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.				280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure																																															.	.	.
Query SS confidence																																															.	.	.
Query Sequence		D	E	I	G	D	M	P	A	P	L	Q	V	K	L	L	R	V	L	Q	E	R	K	V	R	P	L	G	S	N	R	D	I	D	I	N	V	R	I	I	S	A	T	H	R	D	.	.	.	L	P	K	A	M	A	R	G	E	F	R	E	D	L	Y	Y	R	L	N	V	V	S	L	K	I	P	A	L	A	E	R	T
Query Conservation																																															.	.	.
Alig confidence																								.	.	.	.	.	.	.																	.	.	.												.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.																															.	.	.	.	.	.	.
Template Sequence		D	E	V	D	A	L	C	P	S	V	R	V	V	N	Q	L	L	T	E	M	D	G	.	.	.	.	.	.	.	L	E	A	R	Q	Q	V	F	I	M	A	A	T	N	R	P	D	I	I	D	P	A	I	L	R	P	G	R	L	D	.	.	.	.	.	.	.	K	T	L	F	V	G	L	P	P	P	A	D	R	L
Template Known Secondary structure			T		T	T	T				T	T											T	.	.	.	.	.	.	.			S	T	T									S		G	G	G	S						S	T	T	S	S		.	.	.	.	.	.	.							S
Template Predicted Secondary structure																								.	.	.	.	.	.	.																															.	.	.	.	.	.	.
Template SS confidence
		681	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.								.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.								.	.	.	.	.	.	.	740	.	.	.	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.		.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.				.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure																																										.																	.	.	.
Query SS confidence																																										.																	.	.	.
Query Sequence		E	D	I	P	L	L	A	N	H	L	L	R	Q	A	A	E	R	H	K	P	F	V	R	A	F	S	T	D	A	M	K	R	L	M	T	A	S	W	P	G	.	N	V	R	Q	L	V	N	V	I	E	Q	C	V	A	L	T	.	.	.	S	S	P	V	I	S	D	A	L	V	E	Q	A	L	E	G	E	N	T	A
Query Conservation																																										.																	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																																	.																	.	.	.
Template Conservation		.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	A	I	L	K	T	I	T	K	N	G	T	K	P	P	L	D	A	D	V	N	L	E	A	I	A	G	D	L	R	C	D	C	Y	T	G	A	D	L	S	A	L	V	R	E	A	S	I	C	A	L	R	Q	E	M	L	K	V	S	H	K	H	F	E	E	A	F	K	K	V	R	S	S
Template Known Secondary structure		.	.	.	.	.	.	.	.							T	T	T	T	B	T	T	B	B		T	T								T		S	G	G	G	S																									B										T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.
Template SS confidence
										756	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.
		388
Predicted Secondary structure
Query SS confidence
Query Sequence		L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		839

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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