Job Description P0AFU4 Confidence 98.77% Date Thu Jan 5 11:27:17 GMT 2012 Rank 185 Aligned Residues 243 % Identity 19% Template c2v1uA_ PDB info PDB header:replication Chain: A: PDB Molecule:cell division control protein 6 homolog; PDBTitle: structure of the aeropyrum pernix orc1 protein in complex2 with dna Resolution 3.10 Å

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		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.			160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180							.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.																						.	.	.	.	.	.
Query SS confidence																																												.	.																						.	.	.	.	.	.
Query Sequence		D	D	A	L	E	Q	S	A	P	A	T	D	E	R	W	R	E	A	I	V	T	R	S	P	L	M	L	R	L	L	E	Q	A	R	L	V	A	Q	S	D	V	S	.	.	V	L	I	N	G	Q	S	G	T	G	K	E	I	F	A	Q	A	I	H	N	A	.	.	.	.	.	.	S	P	R	N	S	K	P	F	I
Query Conservation																																												.	.																						.	.	.	.	.	.
Alig confidence																																												.	.																						.	.	.	.	.	.
Template Conservation
Template Sequence		S	K	I	F	R	K	R	W	V	L	L	P	D	Y	V	P	D	V	L	P	H	R	E	A	E	L	R	R	L	A	E	V	L	A	P	A	L	R	G	E	K	P	S	N	A	L	L	Y	G	L	T	G	T	G	K	T	A	V	A	R	L	V	L	R	R	L	E	A	R	A	S	S	L	G	V	L	V	K	P	I
Template Known Secondary structure			S	S	B	S						S	T	T				S			T	T											T	T	G	G	G	T	S	S										B		T	T	S	S																				T
Template Predicted Secondary structure
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.										.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.																				.
Query SS confidence																																		.	.	.	.	.	.	.	.	.																				.
Query Sequence		A	I	N	C	G	A	L	P	E	Q	L	L	E	S	E	L	F	G	H	A	R	G	A	F	T	G	A	V	S	N	R	E	.	.	.	.	.	.	.	.	.	G	L	F	Q	A	A	E	G	G	T	L	F	L	D	E	I	G	D	M	.	P	A	P	L	Q	V	K	L	L	R	V	L	Q	E	R	K	V	R	P
Query Conservation																																		.	.	.	.	.	.	.	.	.																				.
Alig confidence																																		.	.	.	.	.	.	.	.	.																				.															.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		Y	V	N	A	R	H	R	E	T	P	Y	R	V	A	S	A	I	A	E	A	V	G	V	R	V	P	F	T	G	L	S	V	G	E	V	Y	E	R	L	V	K	R	L	S	R	L	R	G	I	Y	I	I	V	L	D	E	I	D	F	L	P	K	R	P	G	G	Q	D	L	L	Y	R	I	T	R	.	.	.	.	.
Template Known Secondary structure					T	T	T	S		S													S					S	S																T	T	S		S								T	T	T					S	T	T											.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	S	N	R	D	I	D	I	N	V	R	I	I	S	A	T	H	R	D	L	P	K	A	M	A	R	G	E	F	R	E	D	L	Y	Y	R	L	N	V	V	S	L	K	I	P	A	L	A	E	R	T	E	D	I	P	L	L	A	N	H	L	L	R	Q	A	A	E	R	H	K	P	F	V	R	A	F	S	T	D
Query Conservation
Alig confidence		.	.	.	.	.																.	.	.	.																											.	.														.	.	.	.	.
Template Conservation		.	.	.	.	.																.	.	.	.																											.	.														.	.	.	.	.
Template Sequence		.	.	.	.	.	I	N	Q	E	L	V	S	L	V	G	I	T	N	S	L	.	.	.	.	G	F	V	E	N	L	E	P	R	V	K	S	S	L	G	E	V	E	L	V	F	P	P	Y	T	A	.	.	P	Q	L	R	D	I	L	E	T	R	A	E	E	.	.	.	.	.	A	F	N	P	G	V	L	D	P	D
Template Known Secondary structure		.	.	.	.	.	G	G	G										S		S	.	.	.	.	T	T	S	S	S	S						T	T	T	T	S					B						.	.														.	.	.	.	.		B		T	T	T	B		S	S
Template Predicted Secondary structure		.	.	.	.	.																.	.	.	.																											.	.														.	.	.	.	.
Template SS confidence
							170	.	.	.	.	.	.	.	.	.	180	.	.	.	.					.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210			.	.	.	.	.	.	.	.	.	220	.	.	.						.	.	.	.	.	.	230	.	.	.
		340	.	.	.	.			.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.				.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure							.	.																				.	.	.
Query SS confidence							.	.																				.	.	.
Query Sequence		A	M	K	R	L	.	.	M	T	A	S	W	P	G	N	V	R	Q	L	V	N	V	I	E	Q	C	.	.	.	V	A	L	T	S	S	P	V	I	S	D	A	L	V	E	Q	A	L
Query Conservation							.	.																				.	.	.
Alig confidence							.	.																				.	.	.
Template Conservation
Template Sequence		V	V	P	L	C	A	A	L	A	A	R	E	H	G	D	A	R	R	A	L	D	L	L	R	V	A	G	E	I	A	E	R	R	R	E	E	R	V	R	R	E	H	V	Y	S	A	R
Template Known Secondary structure												S	S	S																				T	T		S		B
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions