Job Description P0AFU4 Confidence 98.65% Date Thu Jan 5 11:27:17 GMT 2012 Rank 193 Aligned Residues 275 % Identity 19% Template c2qbyB_ PDB info PDB header:replication/dna Chain: B: PDB Molecule:cell division control protein 6 homolog 3; PDBTitle: crystal structure of a heterodimer of cdc6/orc1 initiators2 bound to origin dna (from s. solfataricus) Resolution 3.35 Å

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		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.			160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.									.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.			.	.	.	200
Predicted Secondary structure																													.	.																			.	.	.	.	.	.	.	.																				.	.
Query SS confidence																													.	.																			.	.	.	.	.	.	.	.																				.	.
Query Sequence		R	E	A	I	V	T	R	S	P	L	M	L	R	L	L	E	Q	A	R	L	V	A	Q	S	D	V	S	.	.	V	L	I	N	G	Q	S	G	T	G	K	E	I	F	A	Q	A	I	.	.	.	.	.	.	.	.	H	N	A	S	P	R	N	S	K	P	F	I	A	I	N	C	G	A	L	.	.	P	E	Q	L
Query Conservation																													.	.																			.	.	.	.	.	.	.	.																				.	.
Alig confidence																													.	.																			.	.	.	.	.	.	.	.																				.	.
Template Conservation
Template Sequence		F	K	E	I	P	F	R	E	D	I	L	R	D	A	A	I	A	I	R	Y	F	V	K	N	E	V	K	F	S	N	L	F	L	G	L	T	G	T	G	K	T	F	V	S	K	Y	I	F	N	E	I	E	E	V	K	K	E	D	E	E	Y	K	D	V	K	Q	A	Y	V	N	C	R	E	V	G	G	T	P	Q	A
Template Known Secondary structure			S	S		T	T																	T	T												T	T	S	S																			S	S	S	S	T	T													S
Template Predicted Secondary structure
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.								.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.																							.
Query SS confidence																			.	.	.	.	.	.	.																							.
Query Sequence		L	E	S	E	L	F	G	H	A	R	G	A	F	T	G	A	V	.	.	.	.	.	.	.	S	N	R	E	G	L	F	Q	A	A	E	G	G	T	L	F	L	D	E	I	G	D	.	M	P	A	P	L	Q	V	K	L	L	R	V	L	Q	E	R	K	V	R	P	L	G	S	N	R	D	I	D	I	N	V	R	I
Query Conservation																			.	.	.	.	.	.	.																							.
Alig confidence																			.	.	.	.	.	.	.																							.																		.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	L	S	S	L	A	G	K	L	T	G	F	S	V	P	K	H	G	I	N	L	G	E	Y	I	D	K	I	K	N	G	T	R	N	I	R	A	I	I	Y	L	D	E	V	D	T	L	V	K	R	R	G	G	D	I	V	L	Y	Q	L	L	R	S	D	.	.	.	.	.	.	.	.	.	.	.	A	N	I	S	V
Template Known Secondary structure													S				S	S	S	S		T												S	S	S								T	T						S	T	T	S									T	S	S	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.												.	.	.	.	.
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.			.	.	.	.	.	350
Predicted Secondary structure																																																																										.	.
Query SS confidence																																																																										.	.
Query Sequence		I	S	A	T	H	R	D	L	P	K	A	M	A	R	G	E	F	R	E	D	L	Y	Y	R	L	N	V	V	S	L	K	I	P	A	L	A	E	R	T	E	D	I	P	L	L	A	N	H	L	L	R	Q	A	A	E	R	H	K	P	F	V	R	A	F	S	T	D	A	M	K	R	L	.	.	M	T	A	S	W	P
Query Conservation																																																																										.	.
Alig confidence									.	.	.	.																.											.	.														.	.	.	.	.																.	.
Template Conservation									.	.	.	.																.											.	.														.	.	.	.	.
Template Sequence		I	M	I	S	N	D	I	.	.	.	.	N	V	R	D	Y	M	E	P	R	V	L	S	S	L	G	.	P	S	V	I	F	K	P	Y	D	A	.	.	E	Q	L	K	F	I	L	S	K	Y	A	E	Y	.	.	.	.	.	G	L	I	K	G	T	Y	D	D	E	I	L	S	Y	I	A	A	I	S	A	K	E	H
Template Known Secondary structure						S	S	T	.	.	.	.	T	T	T	T	T	S							T			.											.	.														.	.	.	.	.	T	S		T	T	S			S												T	T
Template Predicted Secondary structure									.	.	.	.																.											.	.														.	.	.	.	.
Template SS confidence
		178	.	180	.	.	.	.					.	.	.	.	.	190	.	.	.	.	.	.	.	.	.		200	.	.	.	.	.	.	.	.	.			210	.	.	.	.	.	.	.	.	.	220	.	.						.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.		.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
Predicted Secondary structure																				.																																																										.	.	.	.
Query SS confidence																				.																																																										.	.	.	.
Query Sequence		G	N	V	R	Q	L	V	N	V	I	E	Q	C	V	A	L	T	S	.	S	P	V	I	S	D	A	L	V	E	Q	A	L	E	G	E	N	T	A	L	P	T	F	V	E	A	R	N	Q	F	E	L	N	Y	L	R	K	L	L	Q	I	T	K	G	N	V	T	H	A	A	R	M	A	G	R	N	R	.	.	.	.
Query Conservation																				.																																																										.	.	.	.
Alig confidence																				.													.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	D	A	R	K	A	V	N	L	L	F	R	A	A	Q	L	A	S	G	G	G	I	I	R	K	E	H	V	D	K	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	V	D	Y	E	Q	E	R	L	I	E	A	V	K	A	L	P	F	H	Y	K	L	A	L	R	S	L	I	E	S	E	D	V	M	S
Template Known Secondary structure																		T	T	S	S	S											.	.	.	.	.	.	.	.	.	.	.	.	.	.															S	S													T			B
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.															.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
							426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	T	E	F	Y	K	L	L	S	R	H	E	L	D	A	N	D	F	K	E
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.
Template Conservation
Template Sequence		A	H	K	M	Y	T	D	L	C	N	K	F	K	Q	K	P	L	S	Y	R	R	F	S	D
Template Known Secondary structure													T	T
Template Predicted Secondary structure
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions