Job Description P0AFU4 Confidence 99.86% Date Thu Jan 5 11:27:17 GMT 2012 Rank 54 Aligned Residues 127 % Identity 28% Template c2jk1A_ PDB info PDB header:dna-binding Chain: A: PDB Molecule:hydrogenase transcriptional regulatory protein hupr1; PDBTitle: crystal structure of the wild-type hupr receiver domain Resolution 2.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	H	L	L	L	V	D	D	D	P	G	L	L	K	L	L	G	L	R	L	T	S	E	G	Y	S	V	V	T	A	E	S	G	A	E	G	L	R	V	L	N	R	E	K	V	D	L	V	I	S	D	L	R	M	D	E	M	D	G	M	Q	L	F	A	E	I	Q	K	V	Q	P	G	M	P	V	I	I	L	T	A
Query Conservation
Alig confidence																								.
Template Conservation																								.
Template Sequence		P	A	I	L	L	V	D	D	E	P	H	S	L	A	A	M	K	L	A	L	E	D	.	D	F	D	V	L	T	A	Q	G	A	E	A	A	I	A	I	L	E	E	E	W	V	Q	V	I	I	C	D	Q	R	M	P	G	R	T	G	V	D	F	L	T	E	V	R	E	R	W	P	E	T	V	R	I	I	I	T	G
Template Known Secondary structure									S	S												T	T	.	T	S						S	S											S									S			S	S	S														T	T	S							S
Template Predicted Secondary structure																								.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		H	G	S	I	P	D	A	V	A	A	T	.	Q	Q	G	V	F	S	F	L	T	K	P	V	D	K	D	A	L	Y	Q	A	I	D	D	A	L	E	Q	S	A	P	A	T	D	E	R	W	R
Query Conservation													.
Alig confidence													.
Template Conservation
Template Sequence		Y	T	D	S	A	S	M	M	A	A	I	N	D	A	G	I	H	Q	F	L	T	K	P	W	H	P	E	Q	L	L	S	S	A	R	N	A	A	R	M	F	T	L	A	R	E	N	E	R	L
Template Known Secondary structure			T	T											T	T							S	S
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions