Job Description P0AFU4 Confidence 99.16% Date Thu Jan 5 11:27:17 GMT 2012 Rank 160 Aligned Residues 220 % Identity 20% Template c2chgB_ PDB info PDB header:dna-binding protein Chain: B: PDB Molecule:replication factor c small subunit; PDBTitle: replication factor c domains 1 and 2 Resolution 2.1 Å

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		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	Q	S	A	P	A	T	D	E	R	W	R	E	A	I	V	T	R	S	P	L	M	L	R	L	L	E	Q	A	R	L	V	A	Q	S	D	V	S	V	L	I	N	G	Q	S	G	T	G	K	E	I	F	A	Q	A	I	H	N	A	S	P	R	N	S	K	P	F	I	A	I	N	C	G	A	L	P	E	Q	L
Query Conservation
Alig confidence																																	.	.
Template Conservation																																	.	.
Template Sequence		F	E	I	W	V	E	K	Y	R	P	R	T	L	D	E	V	V	G	Q	D	E	V	I	Q	R	L	K	G	Y	V	E	.	.	R	K	N	I	P	H	L	L	F	S	G	P	P	G	T	G	K	T	A	T	A	I	A	L	A	R	D	L	F	G	E	N	W	R	D	N	F	I	E	M	N	A	S	D	E	R	G
Template Known Secondary structure									T	S		S	S	G	G	G			S														.	.	T	T									S		T	T	S	S														G	G	G	T	G	G	G						T	T		T	T
Template Predicted Secondary structure																																	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	S	E	L	F	G	H	A	R	G	A	F	T	G	A	V	S	N	R	E	G	L	F	Q	A	A	E	G	G	T	L	F	L	D	E	I	G	D	M	P	A	P	L	Q	V	K	L	L	R	V	L	Q	E	R	K	V	R	P	L	G	S	N	R	D	I	D	I	N	V	R	I	I	S	A	T	H	R	D	L
Query Conservation
Alig confidence																										.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.												.	.
Template Conservation																										.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.												.	.
Template Sequence		I	D	V	V	R	H	K	I	K	E	F	A	R	T	A	P	I	G	G	A	P	F	K	I	.	.	.	.	.	.	.	I	F	L	D	E	A	D	A	L	T	A	D	A	Q	A	A	L	R	R	T	M	E	M	Y	S	.	.	.	.	.	.	.	.	.	.	.	K	S	C	R	F	I	L	S	C	N	Y	.	.
Template Known Secondary structure														T	S			S	T	T		S				.	.	.	.	.	.	.					T	G	G	G	S																T	.	.	.	.	.	.	.	.	.	.	.	T	T								S		.	.
Template Predicted Secondary structure																										.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.												.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.								.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130												.	.	.	.	.	.	.	.	.	140	.
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure
Query SS confidence
Query Sequence		P	K	A	M	A	R	G	E	F	R	E	D	L	Y	Y	R	L	N	V	V	S	L	K	I	P	A	L	A	E	R	T	E	D	I	P	L	L	A	N	H	L	L	R	Q	A	A	E	R	H	K	P	F	V	R	A	F	S	T	D	A	M	K	R	L	M	T	A	S	W	P	G	N	V	R	Q	L	V	N	V	I
Query Conservation
Alig confidence		.	.	.	.	.																									.	.	.	.	.	.	.	.															.	.	.															.
Template Conservation		.	.	.	.	.																									.	.	.	.	.	.	.	.															.	.	.															.
Template Sequence		.	.	.	.	.	V	S	R	I	I	E	P	I	Q	S	R	C	A	V	F	R	F	K	P	V	P	K	E	A	.	.	.	.	.	.	.	.	M	K	K	R	L	L	E	I	C	E	K	E	G	V	.	.	.	K	I	T	E	D	G	L	E	A	L	I	Y	I	S	.	G	G	D	F	R	K	A	I	N	A	L
Template Known Secondary structure		.	.	.	.	.	G	G	G	S							T														.	.	.	.	.	.	.	.													T		.	.	.															.	T	T
Template Predicted Secondary structure		.	.	.	.	.																									.	.	.	.	.	.	.	.															.	.	.															.
Template SS confidence
							142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.									.	.	.	.	170	.	.	.	.	.	.	.	.	.				180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	C	V	A	L	T	S	S	P	V	I	S	D	A	L	V	E	Q	A	L
Query Conservation
Alig confidence						.	.
Template Conservation						.	.
Template Sequence		Q	G	A	A	.	.	A	I	G	E	V	V	D	A	D	T	I	Y	Q	I	T
Template Known Secondary structure						.	.	T	T		S
Template Predicted Secondary structure						.	.
Template SS confidence
		205	.	.	.			.	210	.	.	.	.	.	.	.	.	.	220	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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