Job Description P0AFU4 Confidence 98.67% Date Thu Jan 5 11:27:17 GMT 2012 Rank 191 Aligned Residues 199 % Identity 19% Template c1sxjB_ PDB info PDB header:replication Chain: B: PDB Molecule:activator 1 37 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	R	W	R	E	A	I	V	T	R	S	P	L	M	L	R	L	L	E	Q	A	R	L	V	A	Q	S	D	V	S	V	L	I	N	G	Q	S	G	T	G	K	E	I	F	A	Q	A	I	H	N	A	S	P	R	N	S	K	P	F	I	A	I	N	C	G	A	L	P	E	Q	L	L	E	S	E	L	F	G	H
Query Conservation
Alig confidence																															.	.
Template Conservation																															.	.
Template Sequence		R	P	Q	V	L	S	D	I	V	G	N	K	E	T	I	D	R	L	Q	Q	I	A	K	D	G	N	M	P	H	.	.	M	I	I	S	G	M	P	G	I	G	K	T	T	S	V	H	C	L	A	H	E	L	L	G	R	S	Y	A	D	G	V	L	E	L	N	A	S	D	D	R	G	I	D	V	V	R	N	Q	I
Template Known Secondary structure				S	S	G	G	G			S		T												S						.	.						S	T	T	S	S														G	G	G										T	T	S			S						T
Template Predicted Secondary structure																															.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.			.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	G	A	F	T	G	A	V	S	N	R	E	G	L	F	Q	A	A	E	G	G	T	L	F	L	D	E	I	G	D	M	P	A	P	L	Q	V	K	L	L	R	V	L	Q	E	R	K	V	R	P	L	G	S	N	R	D	I	D	I	N	V	R	I	I	S	A	T	H	R	D	L	P	K	A	M	A	R	G	E
Query Conservation
Alig confidence															.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Template Sequence		K	H	F	A	Q	K	K	L	H	L	P	P	G	.	.	.	.	.	.	K	H	K	I	V	I	L	D	E	A	D	S	M	T	A	G	A	Q	Q	A	L	R	R	T	M	E	L	Y	S	.	.	.	.	.	.	.	.	.	.	.	N	S	T	R	F	A	F	A	C	N	Q	.	.	.	.	.	.	.	S	N	K
Template Known Secondary structure													T	T	.	.	.	.	.	.									S	G	G	G	S							T	T							T	T	.	.	.	.	.	.	.	.	.	.	.	T	T								S		.	.	.	.	.	.	.	G	G	G
Template Predicted Secondary structure															.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.							.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.												.	.	.	.	140	.	.	.	.	.	.								.	.	.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	R	E	D	L	Y	Y	R	L	N	V	V	S	L	K	I	P	A	L	A	E	R	T	E	D	I	P	L	L	A	N	H	L	L	R	Q	A	A	E	R	H	K	P	F	V	R	A	F	S	T	D	A	M	K	R	L	M	T	A	S	W	P	G	N	V	R	Q	L	V	N	V	I	E	Q	C	V	A
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.																		.	.	.															.
Template Conservation																				.	.	.	.	.	.	.	.																		.	.	.															.
Template Sequence		I	I	E	P	L	Q	S	Q	C	A	I	L	R	Y	S	K	L	S	.	.	.	.	.	.	.	.	D	E	D	V	L	K	R	L	L	Q	I	I	K	L	E	D	V	.	.	.	K	Y	T	N	D	G	L	E	A	I	I	F	T	A	.	E	G	D	M	R	Q	A	I	N	N	L	Q	S	T	V	A
Template Known Secondary structure		S						T	T	S										.	.	.	.	.	.	.	.																T		.	.	.		B													.	T	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.																		.	.	.															.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.									.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.				.	.	.	.	.	190	.	.	.	.	.	.	.	.		.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions