Job Description P0AFU4 Confidence 91.54% Date Thu Jan 5 11:27:17 GMT 2012 Rank 336 Aligned Residues 195 % Identity 15% Template c1q57G_ PDB info PDB header:transferase Chain: G: PDB Molecule:dna primase/helicase; PDBTitle: the crystal structure of the bifunctional primase-helicase of2 bacteriophage t7 Resolution 3.45 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.								.	.	.	.	.	.	.	.	60	.	.	.			.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.													.	.
Query SS confidence																																																			.	.	.	.	.	.	.													.	.
Query Sequence		H	K	P	A	H	L	L	L	V	D	D	D	P	G	L	L	K	L	L	G	L	R	L	T	S	E	G	Y	S	V	V	T	A	E	S	G	A	E	G	L	R	V	L	N	R	E	K	V	D	.	.	.	.	.	.	.	L	V	I	S	D	L	R	M	D	E	M	D	.	.	G	M	Q	L	F	A	E	I	Q	K
Query Conservation																																																			.	.	.	.	.	.	.													.	.
Alig confidence																									.	.																									.	.	.	.	.	.	.					.	.	.	.					.	.
Template Conservation																									.	.																																				.	.	.	.
Template Sequence		N	G	G	K	K	I	V	V	T	E	G	E	I	D	M	L	T	V	M	E	L	Q	D	.	.	C	K	Y	P	V	V	S	L	G	H	G	A	S	A	A	K	K	T	C	A	A	N	Y	E	Y	F	D	Q	F	E	Q	I	I	L	M	.	.	.	.	F	D	M	D	E	A	G	R	K	A	V	E	E	A	A	Q
Template Known Secondary structure		S	S								S	S											T	T	.	.	T		S						S	S	T	T	T	T							T	T						T								.	.	.	.			S	S
Template Predicted Secondary structure																									.	.																																				.	.	.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170			.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.					.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.			110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																																						.	.
Query SS confidence																																						.	.
Query Sequence		V	Q	P	G	M	P	V	I	I	L	T	A	H	G	S	I	P	D	A	V	A	A	T	Q	Q	G	V	F	S	F	L	T	K	P	V	D	.	.	K	D	A	L	Y	Q	A	I	D	D	A	L	E	Q	S	A	P	A	T	D	E	R	W	R	E	A	I	V	T	R	S	P	L	M	L	R	L	L	E	Q	A	R
Query Conservation																																						.	.
Alig confidence															.	.																						.	.
Template Conservation															.	.
Template Sequence		V	L	P	A	G	K	V	R	V	A	V	L	P	.	.	C	K	D	A	N	E	C	H	L	N	G	H	D	R	E	I	M	E	Q	V	W	N	A	G	P	W	I	P	D	G	V	V	S	A	L	S	L	R	E	R	I	R	E	H	L	S	S	E	E	S	V	G	L	L	F	S	G	C	T	G	I	N	D	K	T
Template Known Secondary structure			S		G	G	G							S	.	.	S	S	S						S	S	S										S	S			B				S	S				G	G	G	G											S		T	T		S			S	S		T	T
Template Predicted Secondary structure															.	.
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.			.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	A	Q	S	D	V	S	V	L	I	N	G	Q	S	G	T	G	K	E	I	F	A	Q	A	I	H	N	A	S	P	R	N	S	K	P	F	I	A	I	N	C	G	A	L	P	E	Q	L	L	E	S	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	G	A	R	G	G	E	V	I	M	V	T	S	G	S	G	M	V	M	S	T	F	V	R	Q	Q	A	L	Q	W	G	T	A	M	G	K	K	V	G	L	A	M	L	E	E	S	V	E	E	T	A	E	D	L
Template Known Secondary structure						T	T								S	S		S														T	T	T	S									T	T	S
Template Predicted Secondary structure
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions