Job Description P0AFU4 Confidence 100.00% Date Thu Jan 5 11:27:17 GMT 2012 Rank 5 Aligned Residues 246 % Identity 52% Template c1ojlF_ PDB info PDB header:response regulator Chain: F: PDB Molecule:transcriptional regulatory protein zrar; PDBTitle: crystal structure of a sigma54-activator suggests the2 mechanism for the conformational switch necessary for3 sigma54 binding Resolution 3.0 Å

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		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	T	R	S	P	L	M	L	R	L	L	E	Q	A	R	L	V	A	Q	S	D	V	S	V	L	I	N	G	Q	S	G	T	G	K	E	I	F	A	Q	A	I	H	N	A	S	P	R	N	S	K	P	F	I	A	I	N	C	G	A	L	P	E	Q	L	L	E	S	E	L	F	G	H	A	R	G	A	F	T	G
Query Conservation
Alig confidence																																																																																	.
Template Conservation																																																																																	.
Template Sequence		M	I	G	S	S	P	A	M	Q	H	L	L	N	E	I	A	M	V	A	P	S	D	A	T	V	L	I	H	G	D	S	G	T	G	K	E	L	V	A	R	A	L	H	A	C	S	A	R	S	D	R	P	L	V	T	L	N	C	A	A	L	N	E	S	L	L	E	S	E	L	F	G	H	E	K	G	A	F	T	.
Template Known Secondary structure																					S	T	T									T	T	S	S												S	S		S	S	S								T	T											T				S	S	S			.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	S	N	R	E	G	L	F	Q	A	A	E	G	G	T	L	F	L	D	E	I	G	D	M	P	A	P	L	Q	V	K	L	L	R	V	L	Q	E	R	K	V	R	P	L	G	S	N	R	D	I	D	I	N	V	R	I	I	S	A	T	H	R	D	L	P	K	A	M	A	R	G	E	F	R	E	D	L	Y	Y
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	K	R	R	E	G	R	F	V	E	A	D	G	G	T	L	F	L	D	E	I	G	D	I	S	P	L	M	Q	V	R	L	L	R	A	I	Q	E	R	E	V	Q	R	V	G	S	N	Q	T	I	S	V	D	V	R	L	I	A	A	T	H	R	D	L	A	E	E	V	S	A	G	R	F	R	Q	D	L	Y	Y
Template Known Secondary structure		.	.						T	T	G	G	G	T	T	S							G	G	G															S	S					S	S	S															S	S									T	S	S
Template Predicted Secondary structure		.	.
Template SS confidence
				223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	N	V	V	S	L	K	I	P	A	L	A	E	R	T	E	D	I	P	L	L	A	N	H	L	L	R	Q	A	A	E	R	H	K	P	F	V	R	A	F	S	T	D	A	M	K	R	L	M	T	A	S	W	P	G	N	V	R	Q	L	V	N	V	I	E	Q	C	V	A	L	T	S	S	P	V	I	S	D	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	N	V	V	A	I	E	M	P	S	L	R	Q	R	R	E	D	I	P	L	L	A	D	H	F	L	R	R	F	A	E	R	N	R	K	V	V	K	G	F	T	P	Q	A	M	D	L	L	I	H	Y	D	W	P	G	N	I	R	E	L	E	N	A	I	E	R	A	V	V	L	L	T	G	E	Y	I	S	E	R
Template Known Secondary structure					S								G	G	G	G	G	G	G																T	T						B														T	T																		S	S	S	B		G	G
Template Predicted Secondary structure
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
		376	.	.	.	380	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	E	Q	A	L	E	G	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	L	P	L	A	I	A	A	T
Template Known Secondary structure		G	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		381	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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