Job Description P0AFU4 Confidence 99.53% Date Thu Jan 5 11:27:17 GMT 2012 Rank 135 Aligned Residues 207 % Identity 22% Template c1nsfA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:n-ethylmaleimide sensitive factor; PDBTitle: d2 hexamerization domain of n-ethylmaleimide sensitive factor (nsf) Resolution 1.90 Å

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		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.									.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure																														.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.
Query Sequence		D	E	R	W	R	E	A	I	V	T	R	S	P	L	M	L	R	L	L	E	Q	A	R	L	V	A	Q	S	.	.	.	.	.	.	.	.	D	V	S	V	L	I	N	G	Q	S	G	T	G	K	E	I	F	A	Q	A	I	H	N	A	S	P	R	N	S	K	P	F	I	A	I	N	C	G	A	L	P	E	Q	L
Query Conservation																														.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.																										.	.	.
Template Conservation																																																															.	.	.
Template Sequence		A	S	Y	I	M	N	G	I	I	K	W	G	D	P	V	T	R	V	L	D	D	G	E	L	L	V	Q	Q	T	K	N	S	D	R	T	P	L	V	S	V	L	L	E	G	P	P	H	S	G	K	T	A	L	A	A	K	I	A	E	E	S	.	.	.	N	F	P	F	I	K	I	C	S	P	D	K	M	I	G	F
Template Known Secondary structure		T	T	T		T	T						S																					S	S		S									S	T	T	S	S													.	.	.			S							G	G	G	S	T	T
Template Predicted Secondary structure																																																															.	.	.
Template SS confidence
		500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560				.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.											.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.
Query Sequence		L	E	S	E	L	F	G	H	A	R	G	A	F	T	G	A	V	S	N	R	E	G	L	F	Q	A	A	E	G	G	T	L	F	L	D	E	I	G	.	.	.	.	.	.	.	.	.	.	D	M	P	A	P	L	Q	V	K	L	L	R	V	L	Q	E	R	K	V	R	P	L	G	S	N	R	D	I	D	I	N	V
Query Conservation																																								.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.
Template Sequence		S	E	T	A	K	C	Q	A	M	K	K	I	F	D	.	.	.	.	.	.	.	.	D	A	Y	K	S	Q	L	S	C	V	V	V	D	D	I	E	R	L	L	D	Y	V	P	I	G	P	R	F	S	N	L	V	L	Q	A	L	L	V	L	L	K	K	.	.	.	.	.	.	.	.	A	P	P	Q	G	R	K	L
Template Known Secondary structure																.	.	.	.	.	.	.	.				T	S	S													T	T		B	T	T	T	T	B													T	T		.	.	.	.	.	.	.	.			S	T	T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.
Template SS confidence
		577	.	.	580	.	.	.	.	.	.	.	.	.	590									.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.									.	.	.	.	.	.	.	640
		271	.	.	.	.	.	.	.			.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.
Query SS confidence										.	.
Query Sequence		R	I	I	S	A	T	H	R	.	.	D	L	P	K	A	M	A	R	G	E	F	R	E	D	L	Y	Y	R	L	N	V	V	S	L	K	I	P	A	L	A	E	R	T	E	D	I	P	L	L	A	N	H	L	L	R	Q	A	A	E	R	H	K	P	F	V	R	A	F	S	T	D	A	M	K	R	L	M	T	A	S
Query Conservation										.	.
Alig confidence										.	.												.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.
Template Sequence		L	I	I	G	T	T	S	R	K	D	V	L	Q	E	M	E	M	L	N	A	F	.	.	.	.	.	.	.	.	.	S	T	T	I	H	V	P	N	I	A	T	G	E	Q	.	.	.	.	.	.	.	.	.	L	L	E	A	L	E	L	L	G	N	F	K	D	K	E	R	T	T	I	A	Q	Q	V	K	G	K	K
Template Known Secondary structure								S								T	T	G	G	G	T	S	.	.	.	.	.	.	.	.	.	S														.	.	.	.	.	.	.	.	.									T		S													T	T	S
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.
Template SS confidence
		641	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.										.	.	.	.	.	.	.	.	670	.	.	.	.	.										.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	P	G	N	V	R	Q	L	V	N	V	I	E	Q	C	V	A	L	T	S	S	P	V	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	W	I	G	I	K	K	L	L	M	L	I	E	M	S	L	Q	M	D	P	E	Y	R	V
Template Known Secondary structure																	T	T	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		703	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions