Job Description P0AFU4 Confidence 97.97% Date Thu Jan 5 11:27:17 GMT 2012 Rank 212 Aligned Residues 163 % Identity 17% Template c1jr3E_ PDB info PDB header:transferase Chain: E: PDB Molecule:dna polymerase iii, delta' subunit; PDBTitle: crystal structure of the processivity clamp loader gamma2 complex of e. coli dna polymerase iii Resolution 2.70 Å

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		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.																						.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	S	D	V	S	V	L	I	N	G	Q	S	G	T	G	K	E	I	F	A	Q	A	I	H	N	A	S	P	R	N	S	K	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	I	A	I	N	C	G	A	L	P	E	Q	L	L	E	S	E	L	F	G	H	A	R	G	A	F
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	G	H	H	A	L	L	I	Q	A	L	P	G	M	G	D	D	A	L	I	Y	A	L	S	R	Y	L	L	C	Q	Q	P	Q	G	H	K	S	C	G	H	C	R	G	C	Q	L	M	Q	A	G	T	H	P	D	Y	Y	T	L	A	P	E	K	G	K	N	T	L	G	V	D	A	V	R	E	V	T	E	K	L	N
Template Known Secondary structure					S								T	T	S	S													T		S	S			S	S	S			S		S								T	S			S	S								T	T	S	S	S	B													S
Template Predicted Secondary structure
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	A	V	S	N	R	E	G	L	F	Q	A	A	E	G	G	T	L	F	L	D	E	I	G	D	M	P	A	P	L	Q	V	K	L	L	R	V	L	Q	E	R	K	V	R	P	L	G	S	N	R	D	I	D	I	N	V	R	I	I	S	A	T	H	R	D	L	P	K	A	M	A	R	G	E	F	R	E	D	L
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.
Template Sequence		E	H	A	R	L	G	.	.	.	.	.	.	.	.	G	A	K	V	V	W	V	T	D	A	A	L	L	T	D	A	A	A	N	A	L	L	K	T	L	E	E	.	.	.	.	.	.	.	.	.	.	.	P	P	A	E	T	W	F	F	L	A	T	R	E	P	.	.	.	.	.	.	.	E	R	L	L	A	T	L
Template Known Secondary structure		S			T	T	S	.	.	.	.	.	.	.	.	S							S		G	G	G	B														S	.	.	.	.	.	.	.	.	.	.	.			T	T								S		S	.	.	.	.	.	.	.	T	T	S		T	T	T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.
Template SS confidence
		102	.	.	.	.	.									.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.												.	.	.	.	.	140	.	.	.	.	.	.	.	.								.	150	.	.	.	.	.
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Y	R	L	N	V	V	S	L	K	I	P	A	L	A	E	R	T	E	D	I	P	L	L	A	N	H	L	L	R	Q	A	A	E	R	H	K	P	F	V	R	A	F	S	T	D	A	M	K	R	L	M	T	A	S	W	P	G	N	V	R	Q	L	V	N	V	I
Query Conservation
Alig confidence														.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.																.
Template Conservation														.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.																.
Template Sequence		R	S	R	C	R	L	H	Y	L	A	P	P	.	.	.	.	.	.	.	P	E	Q	Y	A	V	T	W	L	S	R	E	V	.	.	.	.	.	.	.	.	.	T	M	S	Q	D	A	L	L	A	A	L	R	L	S	A	.	G	S	P	G	A	A	L	A	L	F
Template Known Secondary structure		T	T	T	S									.	.	.	.	.	.	.													S	.	.	.	.	.	.	.	.	.													T	T	T	.	T
Template Predicted Secondary structure														.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.																.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.								.	.	170	.	.	.	.	.	.	.	.	.	180										.	.	.	.	.	.	.	.	.	190	.	.	.	.	.		.	.	.	.	200	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions