 |
Job Description | P76510 | Confidence | 42.84% | Date | Thu Jan 5 12:23:50 GMT 2012 |
Rank | 136 | Aligned Residues | 36 |
% Identity | 19% | Template | d2bgca1 |
SCOP info | DNA/RNA-binding 3-helical bundle
| "Winged helix" DNA-binding domain
| CAP C-terminal domain-like
|
Resolution | 2.3 |
|
  |   |
17 | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | |
. | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
| . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | G | C | T | S | G | D | I | A | D | A | F | A | G | Y | . |
S | R | Q | R | V | L | Q | S | A | S | K | L | R | Q | S | G | R | V | A | H | R | C |
Query Conservation |   |
|   |
|
|   |   |
|
|
|
|
|
|   |   |   | . |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |
|
|
|   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|
|   |   |
|
|
|   |   |
| . |
|   |   |
|
|
|
|
|
|
|   |
|   |   |
|   |   |   |
|
|
|   |   |   |   |
Template Sequence |   |
D | N | L | T | M | Q | E | L | G | Y | S | S | . |
G | I | A | H | S | S | A | V | S | R | I | I | S | K | L | K | Q | E | K | V | I | V | Y | K | N |
Template Known Secondary structure |   |
S |
|
|
|  |  |  |  |  |  |  | T | . | T |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S |  |  |  |  | T |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  | . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
167 | . | . | 170 | . | . | . | . | . | . | . | . | |
. | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|