Job Description P76510 Confidence 39.13% Date Thu Jan 5 12:23:50 GMT 2012 Rank 143 Aligned Residues 134 % Identity 13% Template d1ulya_ SCOP info DNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain Hypothetical protein PH1932 Resolution 2.50

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Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.				.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.													.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.													.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	S	M	S	L	L	N	D	V	Q	K	F	I	E	A	H	P	G	C	T	S	G	D	I	A	D	A	F	A	G	Y	S	R	Q	R	V	L	Q	S	A	S	K	L	R	Q	S	G	R	V	A	H	R	C	E	.	.	.	G	D	T	H	R	H	F	P	R	L	T	E	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																								.	.	.													.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.											.																										.	.	.													.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.											.
Template Sequence		X	L	E	D	T	R	R	K	I	L	K	L	L	R	N	K	E	.	X	T	I	S	Q	L	S	E	I	L	.	G	K	T	P	Q	T	I	Y	H	H	I	E	K	L	K	E	A	G	L	V	E	V	K	R	T	E	X	K	G	N	L	V	E	K	Y	Y	G	R	T	A	D	V	F	Y	I	N	L	Y	L	G	D
Template Known Secondary structure				S											T	T			.	B										.	T																T	T	S										T	T									S	S	S						S		S	S
Template Predicted Secondary structure																			.											.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
				67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.												.	.	.	.	.	110	.	.									.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure		.	.																																							.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.
Query SS confidence		.	.																																							.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.
Query Sequence		.	.	R	A	Q	D	P	E	P	Q	P	V	R	E	T	R	P	V	R	N	F	Y	V	G	T	N	D	P	R	V	I	L	C	L	T	R	Q	A	E	E	.	.	.	.	.	.	.	.	.	.	.	L	E	S	R	G	L	Y	R	.	.	.	.	.	.	.	.	R	A	A	T	V	W	M	A	A	F	R	E	S
Query Conservation		.	.																																							.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.
Alig confidence		.	.																																							.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	E	L	R	Y	I	A	R	S	R	L	K	T	K	I	D	I	F	K	R	L	G	Y	Q	F	E	E	N	E	L	L	N	I	X	D	R	X	S	Q	K	E	F	D	A	T	V	R	I	S	K	Y	I	E	E	K	E	D	A	L	K	D	F	S	N	E	D	I	I	H	A	I	E	W	L	S	T	A	E	L	A
Template Known Secondary structure																						T	T																																	T	G	G	G	G	T	T	S																		T
Template Predicted Secondary structure
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		126	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	S	Q	P	E	R	N	N	F	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	D	E	E	Y	L	E	L	L	K	R
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions