Job Description P76510 Confidence 85.09% Date Thu Jan 5 12:23:50 GMT 2012 Rank 40 Aligned Residues 107 % Identity 13% Template d1ku9a_ SCOP info DNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain DNA-binding protein Mj223 Resolution 2.80

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		9	10	.	.	.	.	.	.	.		.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.							.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure											.																																			.															.	.	.	.	.	.
Query SS confidence											.																																			.															.	.	.	.	.	.
Query Sequence		V	Q	K	F	I	E	A	H	P	.	G	C	T	S	G	D	I	A	D	A	F	A	G	Y	S	R	Q	R	V	L	Q	S	A	S	K	L	R	Q	S	G	R	V	A	H	.	R	C	E	G	D	T	H	R	H	F	P	R	L	T	.	.	.	.	.	.	E	R	A	Q	D	P	E	P	Q	P	V	R	E	T	R
Query Conservation											.																																			.															.	.	.	.	.	.
Alig confidence											.												.																							.															.	.	.	.	.	.
Template Conservation																							.
Template Sequence		V	Y	A	I	L	Y	L	S	D	K	P	L	T	I	S	D	I	X	E	E	L	.	K	I	S	K	G	N	V	S	X	S	L	K	K	L	E	E	L	G	F	V	R	K	V	W	I	K	G	E	R	K	N	Y	Y	E	A	V	D	G	F	S	S	I	K	D	I	A	K	R	K	H	D	L	I	A	K	T	Y	E
Template Known Secondary structure										S	S												.	T																T	T	S							T	T		S	S
Template Predicted Secondary structure																							.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	R	N	F	Y	V	G	T	N	D	P	R	V	I	L	C	L	T	R	Q	A	E	E	L	E	S	R	G	L	Y	R	R	A	A	T	V	W	M	A
Query Conservation
Alig confidence													.	.	.	.
Template Conservation													.	.	.	.
Template Sequence		D	L	K	K	L	E	E	K	C	N	E	.	.	.	.	E	E	K	E	F	I	K	Q	K	I	K	G	I	E	R	X	K	K	I	S	E	K	I	L	E
Template Known Secondary structure										S		T	.	.	.	.	T	S												T
Template Predicted Secondary structure													.	.	.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120					.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions