Job Description P21420 Confidence 100.00% Date Thu Jan 5 11:38:19 GMT 2012 Rank 2 Aligned Residues 330 % Identity 65% Template d1phoa_ SCOP info Transmembrane beta-barrels Porins Porin Resolution 3.00

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	I	Y	N	K	D	S	N	K	L	D	L	Y	G	K	V	N	A	K	H	Y	F	S	S	N	D	A	D	D	G	D	T	T	Y	A	R	L	G	F	K	G	E	T	Q	I	N	D	Q	L	T	G	F	G	Q	W	E	Y	E	F	K	G	N	R	A	E	S	Q	G	S	S	K	D	K	T	R	L	A	F	A
Query Conservation
Alig confidence																																																																								.
Template Conservation																																																																								.
Template Sequence		A	E	I	Y	N	K	D	G	N	K	L	D	V	Y	G	K	V	K	A	M	H	Y	M	S	D	N	A	S	K	D	G	D	Q	S	Y	I	R	F	G	F	K	G	E	T	Q	I	N	D	Q	L	T	G	Y	G	R	W	E	A	E	F	A	G	N	K	A	E	S	D	T	A	.	Q	Q	K	T	R	L	A	F	A
Template Known Secondary structure								S	S	B																S	S	S	S																			S	S	S													S	S	S		T	T				.
Template Predicted Secondary structure																																																																								.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	K	F	G	D	Y	G	S	I	D	Y	G	R	N	Y	G	V	A	Y	D	I	G	A	W	T	D	V	L	P	E	F	G	G	D	T	W	T	Q	T	D	V	F	M	T	Q	R	A	T	G	V	A	T	Y	R	N	N	D	F	F	G	L	V	D	G	L	N	F	A	A	Q	Y	Q	G	K	N	D	R	S	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	L	K	Y	K	D	L	G	S	F	D	Y	G	R	N	L	G	A	L	Y	D	V	E	A	W	T	D	M	F	P	E	F	G	G	D	S	S	A	Q	T	D	N	F	M	T	K	R	A	S	G	L	A	T	Y	R	N	T	D	F	F	G	V	I	D	G	L	N	L	T	L	Q	Y	Q	G	K	N	E	N	R	D
Template Known Secondary structure						T	T	T											S	T					T	T	T			S	S	S			S		S	S			T	T	S	T	T	T	S												S	T	T	T	T		T	T											B		S	S
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	N	Y	T	E	G	N	G	D	G	F	G	F	S	A	T	Y	E	Y	E	G	F	G	I	G	A	T	Y	A	K	S	D	R	T	D	T	Q	V	N	A	G	K	V	L	P	E	V	F	A	S	G	K	N	A	E	V	W	A	A	G	L	K	Y	D	A	N	N	I	Y	L	A	T	T	Y	S	E	T	Q	N
Query Conservation
Alig confidence				.	.	.																																		.	.	.	.
Template Conservation				.	.	.																																		.	.	.	.
Template Sequence		V	K	.	.	.	K	Q	N	G	D	G	F	G	T	S	L	T	Y	D	F	G	G	S	D	F	A	I	S	G	A	Y	T	N	S	D	R	T	N	.	.	.	.	E	Q	N	L	Q	S	R	G	T	G	K	R	A	E	A	W	A	T	G	L	K	Y	D	A	N	N	I	Y	L	A	T	F	Y	S	E	T	R	K
Template Known Secondary structure		S	T	.	.	.	T		B		S											T	T	T	T														G	.	.	.	.	G	G	T	T	S	S	S	S		S	S														T	T												S
Template Predicted Secondary structure				.	.	.																																		.	.	.	.
Template SS confidence
		166	.				.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200					.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	T	V	F	A	D	H	F	V	A	N	K	A	Q	N	F	E	A	V	A	Q	Y	Q	F	D	F	G	L	R	P	S	V	A	Y	L	Q	S	K	G	K	D	L	G	V	W	G	D	Q	D	L	V	K	Y	V	D	V	G	A	T	Y	Y	F	N	K	N	M	S	T	F	V	D	Y	K	I	N	L	L	D	K	N
Query Conservation
Alig confidence				.																																																																													.
Template Conservation				.																																																																													.
Template Sequence		M	T	.	P	I	T	G	G	F	A	N	K	T	Q	N	F	E	A	V	A	Q	Y	Q	F	D	F	G	L	R	P	S	L	G	Y	V	L	S	K	G	K	D	I	E	G	I	G	D	E	D	L	V	N	Y	I	D	V	G	A	T	Y	Y	F	N	K	N	M	S	A	F	V	D	Y	K	I	N	Q	L	D	S	.
Template Known Secondary structure			S	.			S	S	S	S		S														S	S	S														S	B	T	T	T	B																S	S	S	S														S	.
Template Predicted Secondary structure				.																																																																													.
Template SS confidence
		237	.		.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	T	K	A	L	G	V	S	T	D	D	I	V	A	V	G	L	V	Y	Q	F
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	D	N	K	L	N	I	N	N	D	D	I	V	A	V	G	M	T	Y	Q	F
Template Known Secondary structure		.	.	S		T	T
Template Predicted Secondary structure		.	.
Template SS confidence
				321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions