Job Description P21420 Confidence 2.11% Date Thu Jan 5 11:38:19 GMT 2012 Rank 79 Aligned Residues 180 % Identity 11% Template d1kmoa_ SCOP info Transmembrane beta-barrels Porins Ligand-gated protein channel Resolution 2.00

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		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.								250	.	.	.	.	.	.
Predicted Secondary structure																																																																				.	.	.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.	.	.
Query Sequence		F	D	N	Y	T	E	G	N	G	D	G	F	G	F	S	A	T	Y	E	Y	E	G	F	G	I	G	A	T	Y	A	K	S	D	R	T	D	T	Q	V	N	A	G	K	V	L	P	E	V	F	A	S	G	K	N	A	E	V	W	A	A	G	L	K	Y	D	A	.	.	.	.	.	.	.	N	N	I	Y	L	A	T
Query Conservation																																																																				.	.	.	.	.	.	.
Alig confidence																																																																				.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	G	N	V	E	P	E	K	A	R	T	W	E	L	G	T	R	Y	D	D	G	A	L	T	A	E	M	G	L	F	L	I	N	F	N	N	Q	Y	D	S	N	Q	T	N	D	T	V	T	A	R	G	K	T	R	H	T	G	L	E	T	Q	A	R	Y	D	L	G	T	L	T	P	T	L	D	N	V	S	I	Y	A
Template Known Secondary structure		T	S																			S	S																S	S			S	S	S			T	T																		G	G	G	T		G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		529	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.						.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.												300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure																					.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	Y	S	E	T	Q	N	M	T	V	F	A	D	H	F	V	A	N	K	.	.	.	.	.	A	Q	N	F	E	A	V	A	Q	Y	Q	F	D	F	G	L	R	P	S	V	A	Y	L	Q	.	.	.	.	.	.	.	.	.	.	.	S	K	G	K	D	L	G	V	W	G	D	Q	D	L	V	K	Y	V	D	V	G
Query Conservation																					.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.													.												.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.
Template Sequence		S	Y	A	Y	V	N	A	E	I	R	E	K	G	D	T	Y	G	N	L	V	P	F	S	P	K	H	K	G	T	L	G	V	D	Y	K	P	.	G	N	W	T	F	N	L	N	S	D	F	Q	S	S	Q	F	A	D	N	A	N	T	V	K	E	S	A	D	G	S	T	G	R	I	P	G	F	M	L	W	G	A	R
Template Known Secondary structure												S	S	S	T	T	T	T		B		T	T			S												.	T	T													B		S	S	T	T				S			T	T	S	S	S	S		B
Template Predicted Secondary structure																																						.
Template SS confidence
		609	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.		.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.
		321	.	.	.	.	.				.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.								.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure								.	.	.																										.	.	.	.	.	.	.
Query SS confidence								.	.	.																										.	.	.	.	.	.	.
Query Sequence		A	T	Y	Y	F	N	.	.	.	K	N	M	S	T	F	V	D	Y	K	I	N	L	L	D	K	N	D	F	T	K	A	L	G	V	.	.	.	.	.	.	.	S	T	D	D	I	V	A	V	G	L	V	Y	Q	F
Query Conservation								.	.	.																										.	.	.	.	.	.	.
Alig confidence								.	.	.										.																.	.	.	.	.	.	.
Template Conservation																				.
Template Sequence		V	A	Y	D	F	G	P	Q	M	A	D	L	N	L	A	F	G	V	.	K	N	I	F	D	Q	D	Y	F	I	R	S	Y	D	D	N	N	K	G	I	Y	A	G	Q	P	R	T	L	Y	M	Q	G	S	L	K	F
Template Known Secondary structure								T	T	T	T									.		S	T	T										S	S	T	T									S
Template Predicted Secondary structure																				.
Template SS confidence
		688	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.		.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions