Job Description P21420 Confidence 97.52% Date Thu Jan 5 11:38:19 GMT 2012 Rank 23 Aligned Residues 307 % Identity 11% Template c3jtyB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:benf-like porin; PDBTitle: crystal structure of a benf-like porin from pseudomonas fluorescens2 pf-5 Resolution 2.58 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.						.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.						.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.							.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.																					.	.	.	.	.																			.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.																					.	.	.	.	.																			.	.	.	.	.	.
Query Sequence		D	L	Y	G	K	V	N	A	K	H	Y	F	S	S	N	D	A	D	D	.	.	.	.	.	G	D	T	T	Y	A	R	L	G	F	K	G	E	T	Q	I	N	D	Q	L	.	.	.	.	.	T	G	F	G	Q	W	E	Y	E	F	K	G	N	R	A	E	S	Q	.	.	.	.	.	.	G	S	S	K	D	K	T
Query Conservation																					.	.	.	.	.																					.	.	.	.	.																			.	.	.	.	.	.
Alig confidence																					.	.	.	.	.																					.	.	.	.	.																			.	.	.	.	.	.
Template Conservation
Template Sequence		Q	A	N	L	T	L	R	N	F	Y	F	N	R	N	F	T	N	P	T	K	A	Q	G	K	A	E	E	W	T	Q	S	F	I	L	D	A	K	S	G	F	T	Q	G	T	V	G	F	G	M	D	V	L	G	L	Y	S	L	K	L	D	G	G	K	G	T	G	G	T	Q	L	L	P	L	P	A	D	N	F	G	R
Template Known Secondary structure																			T	T	S	S																					S	S	S																			T	T	S			S	S	S	S					S
Template Predicted Secondary structure
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	A	F	A	G	L	K	F	G	D	Y	G	S	I	D	Y	G	R	N	Y	G	V	A	Y	D	I	G	A	W	T	D	V	L	P	E	F	G	G	D	T	W	T	Q	T	D	V	F	M	T	Q	R	A	T	G	V	A	T	Y	R	N	N	D	F	F	G	L	V	D	G	L	N	F	A	A	Q	Y	Q	G	K
Query Conservation
Alig confidence														.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	G	V	A	F	K	A	R	L	S	Q	T	.	E	V	K	V	G	E	W	M	P	V	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	I	L	R	S	D	D	G	R	S	L	P	Q	T	F	R	G	G	Q	I	T	S	K	E	I	A	G	L	T	L	Y	G	G	Q	F	R	A	N	S	P	R
Template Known Secondary structure											T	T		.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T						S	S	S	S														S	T	T														T
Template Predicted Secondary structure														.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.																.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		179	180	.	.								.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.																						.	.	230
Predicted Secondary structure						.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	D	R	S	.	.	.	.	.	.	.	D	F	D	N	Y	T	E	G	N	G	D	G	F	G	F	S	A	T	Y	E	Y	E	G	F	G	I	G	A	T	Y	A	K	S	D	R	T	D	T	Q	V	N	A	G	K	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	E
Query Conservation						.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	D	S	S	M	S	D	M	S	M	F	G	K	A	A	F	T	S	D	R	F	N	F	Q	G	A	E	Y	A	F	N	D	K	R	T	Q	I	A	L	W	N	A	Q	L	K	D	I	Y	S	Q	Q	F	I	N	L	I	H	S	Q	P	L	G	D	W	T	L	G	A	N	L	G	F	F	Y	G	K	E	D	G	S
Template Known Secondary structure		T		S	S		B					T	T							S												T	T	T	T											T	T	T															S	S																T	T
Template Predicted Secondary structure
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.																	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.					.	290
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Query Sequence		V	F	A	S	G	K	N	A	E	V	W	A	A	G	L	K	Y	D	A	N	N	I	Y	L	A	T	T	Y	S	E	T	Q	N	M	T	V	F	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	H	F	V	A	N	K	A	Q	N	F	E	A	V	A	Q	Y	Q	F	D	.	.	.	.	F	G
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Template Conservation
Template Sequence		A	R	A	G	D	M	E	N	R	T	W	S	G	L	F	S	A	K	Y	G	G	N	T	F	Y	V	G	L	Q	K	L	T	G	D	S	A	W	M	R	V	N	G	T	S	G	G	T	L	A	N	D	S	Y	N	A	S	Y	D	N	A	K	E	K	S	W	Q	V	R	H	D	Y	N	F	A	A	L	G	V	P	G
Template Known Secondary structure			T	T																	T	T													S	S					B	T	T				T	T	S	T	T			S	S					S	T	T												T	T	T	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.					.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.
Query SS confidence																																						.	.	.	.
Query Sequence		L	R	P	S	V	A	Y	L	Q	S	K	G	K	D	L	G	V	W	G	D	Q	D	L	V	K	Y	V	D	V	G	A	T	Y	Y	F	N	.	.	.	.	K	N	M	S	T	F	V	D	Y	K	I	N	L	L	D	K	N	D	F	T	K	A	L	G	V	S	T	D	D	I	V	A	V	G	L	V	Y	Q	F
Query Conservation																																						.	.	.	.
Alig confidence																		.																				.	.	.	.																	.	.	.	.	.	.	.
Template Conservation																		.																																								.	.	.	.	.	.	.
Template Sequence		L	T	L	M	N	R	Y	I	S	G	S	N	V	H	T	A	.	T	V	S	D	G	K	E	W	G	R	E	S	E	V	A	Y	T	V	Q	S	G	T	L	K	N	L	N	L	K	W	R	N	S	T	M	R	R	D	F	.	.	.	.	.	.	.	S	N	N	E	F	D	E	N	R	L	I	I	S	Y	P	L
Template Known Secondary structure																	T	.	T																			S	S	S	S	T	T													S	S	.	.	.	.	.	.	.		S
Template Predicted Secondary structure																		.																																								.	.	.	.	.	.	.
Template SS confidence
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.		.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.								.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions