Job Description P21420 Confidence 98.46% Date Thu Jan 5 11:38:19 GMT 2012 Rank 12 Aligned Residues 305 % Identity 10% Template c2y0kA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:pyroglutatmate porin opdo; PDBTitle: crystal structure of pseudomonas aeruginosa opdo Resolution 2.30 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	Y	G	K	V	N	A	K	H	Y	F	S	S	N	D	A	D	D	G	D	T	T	Y	A	R	L	G	F	K	G	E	T	Q	I	N	D	Q	L	T	G	F	G	Q	W	E	Y	E	F	K	G	N	R	A	E	S	Q	G	S	S	K	D	K	T	R	L	A	F	A	G	L	K	F	G	D	Y	G	S	I	D
Query Conservation
Alig confidence																																							.																																							.
Template Conservation																																							.																																							.
Template Sequence		H	A	S	L	E	L	R	N	F	Y	F	N	R	D	F	R	G	A	R	D	N	A	D	E	W	A	Q	G	F	L	L	R	L	E	S	G	F	.	S	E	G	T	V	G	F	G	V	D	A	I	G	L	L	G	F	K	L	D	Q	D	D	Y	A	K	L	G	L	T	A	K	A	R	V	S	N	S	.	L	L	K
Template Known Secondary structure																			G	G	G																		.		S	S	S	S																															T	T		.
Template Predicted Secondary structure																																							.																																							.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.		.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.					.	.	.	.	190
Predicted Secondary structure																																																																									.	.	.	.
Query SS confidence																																																																									.	.	.	.
Query Sequence		Y	G	R	N	Y	G	V	A	Y	D	I	G	A	W	T	D	V	L	P	E	F	G	G	D	T	W	T	Q	T	D	V	F	M	T	Q	R	A	T	G	V	A	T	Y	R	N	N	D	F	F	G	L	V	D	G	L	N	F	A	A	Q	Y	Q	G	K	N	D	R	S	D	F	D	.	.	.	.	N	Y	T	E	G
Query Conservation																																																																									.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	G	A	L	H	F	K	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	V	S	A	N	D	T	R	L	L	P	E	L	F	R	G	A	L	L	D	V	Q	E	I	D	G	L	T	L	R	G	A	H	L	D	R	N	K	L	N	S	S	S	D	Y	Q	V	F	S	A	N	R	I	G	G	R
Template Known Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T						S	S	S	S														S	S	S														T	T		S	S		B					T	T	T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		107	.	.	110	.	.	.	.																.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		191	.	.	.	.	.	.	.	.	200	.	.		.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.																			.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure														.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	G	D	G	F	G	F	S	A	T	Y	E	.	Y	E	G	F	G	I	G	A	T	Y	A	K	S	D	R	T	D	T	Q	V	N	A	G	K	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	E	V	F	A	S	G	K	N	A	E	V	W	A	A	G	L	K	Y	D	A	N	N
Query Conservation														.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	D	A	F	D	F	A	G	G	D	Y	R	L	T	P	A	L	T	A	S	L	H	Q	G	R	L	K	D	I	Y	R	Q	T	F	A	G	L	V	H	T	L	D	L	G	R	S	L	K	S	D	L	R	F	A	R	A	S	E	D	G	G	F	R	E	L	D	N	R	A	F	G	A	L	F	S	L	R	L	G	A
Template Known Secondary structure			S											S	S	S	S											T	T	T																															T	T	S																	T	T
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.																.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.					290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Query Sequence		I	Y	L	A	T	T	Y	S	E	T	Q	N	M	T	V	F	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	H	F	V	A	N	K	A	Q	N	F	E	A	V	A	Q	Y	Q	F	D	F	.	.	.	.	G	L	R	P	S	V	A	Y	L	Q	S	K	G	K	D	L	G	V	W	G	D	Q	D
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.																.
Template Conservation																																																																										.
Template Sequence		H	A	V	A	A	G	Y	Q	R	I	S	G	D	D	P	Y	P	Y	I	A	G	S	D	P	Y	L	V	N	F	I	Q	I	G	D	F	G	N	V	D	E	R	S	W	Q	L	R	Y	D	Y	D	F	G	A	L	G	L	P	G	L	S	F	M	S	R	Y	V	S	G	D	N	V	A	.	R	G	A	A	N	D	G
Template Known Secondary structure													S	S	S					B	T	T	S					T	T			S	S					S	T	T													T	T	T	T		T	T															.		T	T
Template Predicted Secondary structure																																																																										.
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.		.	.	.	.	330	.	.
		313	.	.	.	.	.	.	320	.	.	.	.	.	.					.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure																.	.	.	.
Query SS confidence																.	.	.	.
Query Sequence		L	V	K	Y	V	D	V	G	A	T	Y	Y	F	N	.	.	.	.	K	N	M	S	T	F	V	D	Y	K	I	N	L	L	D	K	N	D	F	T	K	A	L	G	V	S	T	D	D	I	V	A	V	G	L	V	Y	Q	F
Query Conservation																.	.	.	.
Alig confidence																.	.	.	.																	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.
Template Sequence		K	E	W	E	R	N	T	D	L	G	Y	V	V	Q	S	G	P	L	K	N	L	G	V	K	W	R	N	A	T	V	R	S	N	F	.	.	.	.	.	.	.	.	A	N	D	L	D	E	N	R	L	I	L	S	Y	S	L
Template Known Secondary structure																S	S	T	T	T	T													S	S	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.									.	.	.	370	.	.	.	.	.	.	.	.	.	380	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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