Job Description P21420 Confidence 97.85% Date Thu Jan 5 11:38:19 GMT 2012 Rank 17 Aligned Residues 314 % Identity 13% Template c2odjA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:porin d; PDBTitle: crystal structure of the outer membrane protein oprd from pseudomonas2 aeruginosa Resolution 2.90 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	M	A	M	S	A	Q	A	A	E	I	Y	N	K	D	S	N	K	L	D	L	Y	G	K	V	N	A	K	H	Y	F	S	S	N	D	A	D	D	G	D	T	T	Y	A	R	L	G	F	K	G	E	T	Q	I	N	D	Q	L	T	G	F	G	Q	W	E	Y	E	F	K	G	N	R	A	E	S	Q	G	S	S
Query Conservation
Alig confidence																		.	.	.	.																.	.	.																						.	.	.
Template Conservation																		.	.	.	.																.	.	.																						.	.	.
Template Sequence		X	F	V	S	D	Q	A	E	A	K	G	F	I	E	D	S	.	.	.	.	S	L	D	L	L	L	R	N	Y	Y	F	N	R	D	G	.	.	.	K	R	V	D	W	T	Q	G	F	L	T	T	Y	E	S	G	F	T	Q	G	T	.	.	.	V	G	F	G	V	D	A	F	G	Y	L	G	L	K	L	D	G	T
Template Known Secondary structure			S				T	T	S				S	S	S	B		.	.	.	.																.	.	.																			S	S	S	.	.	.
Template Predicted Secondary structure																		.	.	.	.																.	.	.																						.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.					.	.	20	.	.	.	.	.	.	.	.	.	30	.	.				.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.				.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	D	K	T	R	L	A	F	A	G	L	K	F	G	D	Y	G	S	I	D	Y	G	R	N	Y	G	V	A	Y	D	I	G	A	W	T	D	V	L	P	E	F	G	G	D	T	W	T	Q	T	D	V	F	M	T	Q	R	A	T	G	V	A	T	Y	R	N	N	D	F	F	G	L	V	D	G	L	N	F	A	A	Q
Query Conservation
Alig confidence																.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Template Conservation																.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Template Sequence		D	Y	S	R	A	G	G	A	V	K	V	R	I	S	.	K	T	X	L	K	W	G	E	X	Q	P	T	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	V	F	A	A	G	G	S	R	L	F	P	Q	T	A	T	G	F	Q	L	Q	S	S	E	.	.	.	.	F	E	G	L	D	L	E	A	G
Template Known Secondary structure															T	.	T												S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	B						S	S	S														.	.	.	.	S	T	T
Template Predicted Secondary structure																.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.																.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.					.	.	.	150	.	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.		.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.																							.	.	230	.
Predicted Secondary structure																														.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	Q	G	K	N	D	R	S	D	F	D	N	Y	T	E	G	N	G	D	G	F	G	F	S	A	T	Y	E	.	Y	E	G	F	G	I	G	A	T	Y	A	K	S	D	R	T	D	T	Q	V	N	A	G	K	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	E	V
Query Conservation																														.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.																.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.
Template Sequence		H	F	T	E	E	L	Y	A	T	Y	A	.	.	G	E	T	A	K	S	A	D	F	I	G	G	R	Y	A	I	T	D	N	L	S	A	S	L	Y	G	A	E	L	E	D	I	Y	R	Q	Y	Y	L	N	S	N	Y	T	I	P	L	A	S	D	Q	S	L	G	F	D	F	N	I	Y	R	T	N	D	E	G	K	A
Template Known Secondary structure										T	T	T	.	.					S											S	S	S	S											T	T	T																T	T																T	T
Template Predicted Secondary structure													.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.			.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.																.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.					.	.	290	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Query Sequence		F	A	S	G	K	N	A	E	V	W	A	A	G	L	K	Y	D	A	N	N	I	Y	L	A	T	T	Y	S	E	T	Q	N	M	T	V	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	H	F	V	A	N	K	A	Q	N	F	E	A	V	A	Q	Y	Q	F	.	.	.	.	D	F	G	L	R
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Template Conservation
Template Sequence		K	A	G	D	I	S	N	T	T	W	S	L	A	A	A	Y	T	L	D	A	H	T	F	T	L	A	Y	Q	K	V	H	G	D	Q	P	F	D	Y	I	G	F	G	S	I	F	L	A	N	S	V	Q	Y	S	D	F	N	G	P	G	E	K	S	W	Q	A	R	Y	D	L	N	L	A	S	Y	G	V	P	G	L	T
Template Known Secondary structure		S	S																	T	T												S	S	S											S	S	T	T			S	S						T	T												T	T	S	S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		293	.	.	.	.	.	.	300	.	.	.	.													.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.					.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.
Query Sequence		P	S	V	A	Y	L	Q	S	K	G	K	D	.	.	.	.	.	.	.	.	.	.	.	.	L	G	V	W	G	D	Q	D	L	V	K	Y	V	D	V	G	A	T	Y	Y	F	N	.	.	.	.	K	N	M	S	T	F	V	D	Y	K	I	N	L	L	D	K	N	D	F	T	K	A	L	G	V	S	T	D	D	I
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.																.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.
Template Sequence		F	X	V	R	Y	I	N	G	K	D	I	D	G	T	K	X	S	D	N	N	V	G	Y	K	N	Y	G	Y	G	E	D	G	K	H	H	E	T	N	L	E	A	K	Y	V	V	Q	S	G	P	A	K	D	L	S	F	R	I	R	Q	A	W	H	R	A	N	.	.	.	.	.	A	D	Q	G	E	G	D	Q	N	E
Template Known Secondary structure															T	T			S	S		T	T	T	S	S	S				S	S																S	S	T	T	T	T														.	.	.	.	.	T	T	T	S	S		S	B
Template Predicted Secondary structure																																																																			.	.	.	.	.
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.						.	400	.	.	.	.	.	.	.	.
		357	.	.	360	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	V	G	L	V	Y	Q	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	R	L	I	V	D	Y	P	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		409	410	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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