Job Description P21420 Confidence 99.84% Date Thu Jan 5 11:38:19 GMT 2012 Rank 9 Aligned Residues 332 % Identity 17% Template c2o4vA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:porin p; PDBTitle: an arginine ladder in oprp mediates phosphate specific transfer across2 the outer membrane Resolution 1.94 Å

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		23	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.						60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure												.																												.	.	.	.	.
Query SS confidence												.																												.	.	.	.	.
Query Sequence		A	A	E	I	Y	N	K	D	S	N	.	K	L	D	L	Y	G	K	V	N	A	K	H	Y	F	S	S	N	D	A	D	D	G	D	T	T	Y	A	.	.	.	.	.	R	L	G	F	K	G	E	T	Q	I	N	D	Q	L	T	G	F	G	Q	W	E	Y	E	F	K	G	N	R	A	E	S	Q	G	S	S	K	D
Query Conservation												.																												.	.	.	.	.
Alig confidence												.																												.	.	.	.	.																							.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.
Template Sequence		G	L	E	V	A	T	T	D	K	E	F	S	F	K	L	G	G	R	L	Q	A	D	Y	G	R	F	D	G	Y	Y	T	N	N	G	N	T	A	D	A	A	Y	F	R	R	A	Y	L	E	F	G	G	T	A	Y	R	D	W	K	Y	Q	I	N	Y	D	L	.	.	.	.	.	S	R	N	V	G	N	D	S	A	G
Template Known Secondary structure		S						T	T	S	S																			T	T	B	S	S	S	S																			T	T	T									T	.	.	.	.	.	T			S	S	B	T	T	T	B
Template Predicted Secondary structure																																																																			.	.	.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.						.	.	.	.	.	.	.	.	90	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	T	R	L	A	F	A	G	L	K	F	G	D	Y	G	S	I	D	Y	G	R	N	Y	G	V	A	Y	D	I	G	A	W	T	D	V	L	P	E	F	G	G	D	T	W	T	Q	T	D	V	F	M	T	Q	R	A	T	G	V	A	T	Y	R	N	N	D	F	F	G	L	V	D	G	L	N	F	A	A	Q	Y	Q
Query Conservation
Alig confidence																													.																																										.
Template Conservation																													.																																										.
Template Sequence		Y	F	D	E	A	S	V	T	Y	T	G	F	N	P	V	N	L	K	F	G	R	F	Y	T	D	F	G	.	L	E	K	A	T	S	S	K	W	V	T	A	L	E	R	N	L	T	Y	D	I	A	D	W	V	N	D	N	V	G	T	G	I	Q	A	S	S	V	V	G	G	.	M	A	F	L	S	G	S	V	F	S
Template Known Secondary structure												T	T	T	T	S													.					S		T	T	T		S	S	S	S			G	G	G	G	G	S	G	G	G	G			S											T	T	.	T
Template Predicted Secondary structure																													.																																										.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.		.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.		160	.	.	.	.	.	.	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.																												.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	K	N	D	R	S	D	F	D	N	Y	T	E	G	N	G	D	G	F	G	F	S	A	T	Y	E	Y	E	G	F	G	I	G	A	T	Y	A	K	S	D	R	T	D	T	Q	V	N	A	G	K	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	N	N	N	D	T	D	G	D	S	V	K	R	Y	N	L	R	G	V	F	A	P	L	H	E	P	G	N	V	V	H	L	G	L	Q	Y	A	Y	R	D	L	E	D	S	A	V	D	T	R	I	R	P	R	M	G	M	R	G	V	S	T	N	G	G	N	D	A	G	S	N	G	N	R	G	L	F	G	G	S	S
Template Known Secondary structure						B	T	T	S																		T	T															T	T	B						B				T	T		G	G	G	S		S	S	B				G	G	G	B						B
Template Predicted Secondary structure
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	V	F	A	S	G	K	N	A	E	V	W	A	A	G	L	K	Y	D	A	N	N	I	Y	L	A	T	T	Y	S	E	T	Q	N	M	T	V	F	A	D	H	F	V	A	N	K	A	Q	N	F	E	A	V	A	Q	Y	Q	F	D	F	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																										.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.
Template Sequence		A	V	E	G	L	W	K	D	D	S	V	W	G	L	E	G	A	W	A	L	G	A	F	S	A	Q	A	E	Y	L	R	R	T	V	K	A	E	R	D	R	.	.	E	D	L	K	A	S	G	Y	Y	A	Q	L	A	Y	T	L	T	G	E	P	R	L	Y	K	L	D	G	A	K	F	D	T	I	K	P	E	N	K
Template Known Secondary structure				T	T	S																T	T																T	T		.	.																T	T								T	T	T	T								S		T
Template Predicted Secondary structure																																										.	.
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.			290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
						291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.								.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.																		.	.	.	.	.	.	.
Query SS confidence		.	.	.	.																		.	.	.	.	.	.	.
Query Sequence		.	.	.	.	L	R	P	S	V	A	Y	L	Q	S	K	G	K	D	L	G	V	.	.	.	.	.	.	.	W	G	D	Q	D	L	V	K	Y	V	D	V	G	A	T	Y	Y	F	N	K	N	M	S	T	F	V	D	Y	K	I	N	L	L	D	K	N	D	F	T	K	A	L	G	V	S	T	D	D	I	V	A	V
Query Conservation		.	.	.	.																		.	.	.	.	.	.	.
Alig confidence		.	.	.	.																		.	.	.	.	.	.	.																																									.	.
Template Conservation																																																																						.	.
Template Sequence		E	I	G	A	W	E	L	F	Y	R	Y	D	S	I	K	V	E	D	D	N	I	V	V	D	S	A	T	R	E	V	G	D	A	K	G	K	T	H	T	L	G	V	N	W	Y	A	N	E	A	V	K	V	S	A	N	Y	V	K	A	K	T	D	K	I	S	N	A	N	.	.	G	D	D	S	G	D	G	L	V	M
Template Known Secondary structure		T	T																	T	T			S			S	S	B		S	S																S	S	S														S	B			T	T	.	.
Template Predicted Secondary structure																																																																						.	.
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.			.	.	.	.	400	.	.	.	.	.
		360	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	V	Y	Q	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	Q	Y	V	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		406	.	.	.	410	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions