Job Description P21420 Confidence 92.91% Date Thu Jan 5 11:38:19 GMT 2012 Rank 37 Aligned Residues 132 % Identity 17% Template c2jmmA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein Resolution UNK

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure																																																		.
Query SS confidence																																																		.
Query Sequence		E	Y	E	G	F	G	I	G	A	T	Y	A	K	S	D	R	T	D	T	Q	V	N	A	G	K	V	L	P	E	V	F	A	S	G	K	N	A	E	V	W	A	A	G	L	K	Y	D	A	.	N	N	I	Y	L	A	T	T	Y	S	E	T	Q	N	M	T	V	F	A	D	H	F	V	A	N	K	A	Q	N	F	E
Query Conservation																																																		.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.																	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.
Template Sequence		K	D	N	T	W	Y	T	G	A	K	L	G	W	S	Q	Y	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	N	Q	L	G	A	G	A	F	G	G	Y	Q	V	N	P	Y	V	G	F	E	M	G	Y	D	W	L	G	R	M	P	.	.	.	.	.	.	R	K	A	Q	G	V	Q	L	T
Template Known Secondary structure			S	S												T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S													S	S	S												S	S	S	.	.	.	.	.	.	S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.																	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.							.	.	.	.	.	.	.	.	60
		281	.	.	.	.	.	.			.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.										.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.					.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure									.	.																		.	.	.	.	.	.	.	.	.																				.	.	.	.
Query SS confidence									.	.																		.	.	.	.	.	.	.	.	.																				.	.	.	.
Query Sequence		A	V	A	Q	Y	Q	F	.	.	D	F	G	L	R	P	S	V	A	Y	L	Q	S	K	G	K	D	.	.	.	.	.	.	.	.	.	L	G	V	W	G	D	Q	D	L	V	K	Y	V	D	V	G	A	T	Y	.	.	.	.	Y	F	N	K	N	M	S	T	F	V	D	Y	K	I	N	L	L	D	K	N	D	F
Query Conservation									.	.																		.	.	.	.	.	.	.	.	.																				.	.	.	.
Alig confidence									.	.																		.	.	.	.	.	.	.	.	.																				.	.	.	.																				.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		A	K	L	G	Y	P	K	L	G	T	D	D	L	D	I	Y	T	R	L	G	G	M	V	W	R	A	D	T	S	D	K	D	G	N	G	Y	I	S	A	A	E	A	S	V	S	P	V	F	A	G	G	V	E	Y	V	I	R	R	R	I	T	P	E	I	A	T	R	L	E	Y	Q	W	T	N	N	A	S	.	.	.
Template Known Secondary structure								T	T		T	T	T													S	S	B						S	S	S						B																S	S	S		S	S	S											S	S	S	S	.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	K	A	L	G	V	S	T	D	D	I	V	A	V	G	L	V	Y	Q	F
Query Conservation
Alig confidence		.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	D	N	G	M	L	S	L	G	V	S	Y	R	F
Template Known Secondary structure		.	.	.	.	.	.	.													S
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									138	.	140	.	.	.	.	.	.	.	.	.	150

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions