Job Description P21420 Confidence 83.16% Date Thu Jan 5 11:38:19 GMT 2012 Rank 42 Aligned Residues 267 % Identity 12% Template c2iwvD_ PDB info PDB header:ion channel Chain: D: PDB Molecule:outer membrane protein g; PDBTitle: structure of the monomeric outer membrane porin ompg in the2 open and closed conformation Resolution 2.3 Å

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		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Q	L	T	G	F	G	Q	W	E	Y	E	F	K	G	N	R	A	E	S	Q	G	S	S	K	D	K	T	R	L	A	F	A	G	L	K	F	G	D	Y	G	S	I	D	Y	G	R	N	Y	G	V	A	Y	D	I	G	A	W	T	D	V	L	P	E	F	G	G	D	T	W	T	Q	T	D	V	F	M	T	Q	R
Query Conservation
Alig confidence																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	D	W	H	F	N	I	G	A	M	Y	E	I	E	N	V	E	G	Y	G	E	D	M	D	G	L	A	E	P	S	V	Y	F	N	A	A	N	G	P	W	R	I	A	L	A	Y	Y	Q	E	G	P	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	Y	S	A	G	K	R	G	T	W	F	D	R
Template Known Secondary structure																		S	S	S	B	T	T	B	T														T	T														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	T	T				S
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.																.	.	.	.	60	.	.	.	.	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.				.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.
Query SS confidence																																																							.	.	.
Query Sequence		A	T	G	V	A	T	Y	R	N	N	D	F	F	G	L	V	D	G	L	N	F	A	A	Q	Y	Q	G	K	N	D	R	S	D	F	D	N	Y	T	E	G	N	G	D	G	F	G	F	S	A	T	Y	E	Y	.	.	.	E	G	F	G	I	G	A	T	Y	A	K	S	D	R	T	D	T	Q	V	N	A	G	K	V
Query Conservation																																																							.	.	.
Alig confidence																												.																											.	.	.																			.	.	.	.	.	.
Template Conservation																												.																																																.	.	.	.	.	.
Template Sequence		P	E	L	E	V	H	Y	Q	F	L	E	N	D	D	F	S	F	G	L	T	G	G	F	R	N	Y	.	G	Y	H	Y	V	D	E	P	G	K	D	T	A	N	M	Q	R	W	K	I	A	P	D	W	D	V	K	L	T	D	D	L	R	F	N	G	W	L	S	M	Y	K	F	A	N	D	L	.	.	.	.	.	.
Template Known Secondary structure														S	S													.					S	S		T	T																				S	S	S														S			.	.	.	.	.	.
Template Predicted Secondary structure																												.																																																.	.	.	.	.	.
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290		.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure																									.																							.																			.
Query SS confidence																									.																							.																			.
Query Sequence		L	P	E	V	F	A	S	G	K	N	A	E	V	W	A	A	G	L	K	Y	D	A	N	.	N	I	Y	L	A	T	T	Y	S	E	T	Q	N	M	T	V	F	A	D	H	F	V	.	A	N	K	A	Q	N	F	E	A	V	A	Q	Y	Q	F	D	F	G	.	L	R	P	S	V	A	Y	L	Q	S	K	G	K	D
Query Conservation																									.																							.																			.
Alig confidence		.	.																						.																							.																			.
Template Conservation		.	.
Template Sequence		.	.	N	T	T	G	Y	A	D	T	R	V	E	T	E	T	G	L	Q	Y	T	F	N	E	T	V	A	L	R	V	N	Y	Y	L	E	R	G	F	N	M	D	D	S	R	N	N	G	E	F	S	T	Q	E	I	R	A	Y	L	P	L	T	L	G	N	H	S	V	T	P	Y	T	R	I	G	L	D	R	W	S	N
Template Known Secondary structure		.	.							S														S	S	S	B														S	S	T	T			T	T																T	T
Template Predicted Secondary structure		.	.
Template SS confidence
				142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		305	.	.	.					.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure						.	.	.	.
Query SS confidence						.	.	.	.
Query Sequence		L	G	V	W	.	.	.	.	G	D	Q	D	L	V	K	Y	V	D	V	G	A	T	Y	Y	F	N	K	N	M	S	T	F	V	D	Y	K	I	N	L	L	D	K	N	D	F	T	K	A	L	G	V	S	T	D	D	I	V	A	V	G	L	V	Y	Q	F
Query Conservation						.	.	.	.
Alig confidence						.	.	.	.																																			.	.	.	.
Template Conservation																																												.	.	.	.
Template Sequence		W	D	W	Q	D	D	I	E	R	E	G	H	D	F	N	R	V	G	L	F	Y	G	Y	D	F	Q	N	G	L	S	V	S	L	E	Y	A	F	E	W	Q	D	H	.	.	.	.	D	E	G	D	S	D	K	F	H	Y	A	G	V	G	V	N	Y	S	F
Template Known Secondary structure		T	T	T	T	T			S																		S	S	S															.	.	.	.	S	S	S
Template Predicted Secondary structure																																												.	.	.	.
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.					.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions