Job Description P37760 Confidence 100.00% Date Thu Jan 5 11:57:33 GMT 2012 Rank 10 Aligned Residues 279 % Identity 17% Template c2q1wC_ PDB info PDB header:sugar binding protein Chain: C: PDB Molecule:putative nucleotide sugar epimerase/ dehydratase; PDBTitle: crystal structure of the bordetella bronchiseptica enzyme wbmh in2 complex with nad+ Resolution 2.19 Å

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		1	.		.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.															.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
Predicted Secondary structure				.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	N	.	I	L	L	F	G	K	T	G	Q	V	G	W	E	L	Q	R	A	L	A	P	L	G	N	L	I	A	F	D	V	H	S	T	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	C	G	D	F	S	N	P	E	G	V	A	E	T	V	R	S	I	R	P	D	I	I	V	N	A	A	A	H	T
Query Conservation				.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	K	K	V	F	I	T	G	I	C	G	Q	I	G	S	H	I	A	E	L	L	L	E	R	G	D	K	V	V	G	I	D	N	F	A	T	G	R	R	E	H	L	K	D	H	P	N	L	T	F	V	E	G	S	I	A	D	H	A	L	V	N	Q	L	I	G	D	L	Q	P	D	A	V	V	H	T	A	A	S	Y
Template Known Secondary structure									T	T	T	S													T	T										S	S			G	G	G	S				T	T								T	T															S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	D	K	A	E	S	E	P	E	F	A	Q	L	I	N	A	T	S	V	E	A	I	A	K	A	A	N	E	V	G	A	W	V	I	H	Y	S	T	D	Y	V	F	P	G	N	G	D	M	P	W	L	E	T	D	A	T	A	P	L	N	V	Y	G	E	T	K	L	A	G	E	K	A	L	Q	E	Y	C	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	D	P	D	D	W	Y	N	D	T	L	T	N	C	V	G	G	S	N	V	V	Q	A	A	K	K	N	N	V	G	R	F	V	Y	F	Q	T	A	L	C	Y	G	V	K	P	I	Q	Q	P	V	R	L	D	H	P	R	N	P	A	N	S	S	Y	A	I	S	K	S	A	N	E	D	Y	L	E	Y	S	G	L	D
Template Known Secondary structure		S		T	T										T													T	T		S								G	G	G	G		S	S		S	S	S	S	B		T	T						T	T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	L	I	F	R	T	S	W	V	Y	A	G	K	G	N	N	F	A	K	T	M	L	R	L	A	K	E	R	E	E	L	A	V	I	N	D	Q	F	G	A	P	T	G	A	E	L	L	A	D	C	T	A	H	A	I	R	V	A	L	N	K	P	D	V	A	G	L	Y	H	L	V	A	S	G	T	T	T	W	Y	D
Query Conservation
Alig confidence																																				.																					.	.	.	.	.
Template Conservation																																				.																					.	.	.	.	.
Template Sequence		F	V	T	F	R	L	A	N	V	V	G	P	R	N	S	G	P	L	P	I	F	F	Q	R	L	S	E	G	K	K	C	F	V	T	.	K	A	R	R	D	F	V	F	V	K	D	L	A	R	A	T	V	R	A	V	.	.	.	.	.	D	G	V	G	H	G	A	Y	H	F	S	S	G	T	D	V	A	I	K	E
Template Known Secondary structure								S				S	T	T														T	T							.	S																				.	.	.	.	.	T	T									S		S
Template Predicted Secondary structure																																				.																					.	.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.						.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.
Query SS confidence																																																									.
Query Sequence		Y	A	A	L	V	F	E	E	A	R	K	A	G	I	P	L	A	L	N	K	L	N	A	V	P	T	T	A	Y	P	T	P	A	R	R	P	H	N	S	R	L	N	T	E	K	F	Q	Q	N	F	A	L	V	L	P	.	D	W	Q	V	G	V	K	R	M	L	N	E	L	F	T	T	T
Query Conservation																																																									.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	Y	D	A	V	V	E	A	M	A	L	P	S	Y	P	E	P	E	I	R	E	L	G	A	P	S	I	.	.	.	.	.	.	.	.	.	.	.	.	L	L	D	P	S	R	T	I	Q	D	F	G	K	I	E	F	T	P	L	K	E	T	V	A	A	A	V	A	Y	F	R	E	Y	G
Template Known Secondary structure											T		S														B		.	.	.	.	.	.	.	.	.	.	.	.		B											S
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.													.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions