Job Description P37760 Confidence 100.00% Date Thu Jan 5 11:57:33 GMT 2012 Rank 7 Aligned Residues 278 % Identity 17% Template c2pzlB_ PDB info PDB header:sugar binding protein Chain: B: PDB Molecule:putative nucleotide sugar epimerase/ dehydratase; PDBTitle: crystal structure of the bordetella bronchiseptica enzyme2 wbmg in complex with nad and udp Resolution 2.39 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.															.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	N	I	L	L	F	G	K	T	G	Q	V	G	W	E	L	Q	R	A	L	A	P	L	G	N	L	I	A	F	D	V	H	S	T	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	C	G	D	F	S	N	P	E	G	V	A	E	T	V	R	S	I	R	P	D	I	I	V	N	A	A	A	H	T	A
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	R	I	L	I	T	G	G	A	G	C	L	G	S	N	L	I	E	H	W	L	P	Q	G	H	E	I	L	V	I	D	N	F	A	T	G	K	R	E	V	L	P	P	V	A	G	L	S	V	I	E	G	S	V	T	D	A	G	L	L	E	R	A	F	D	S	F	K	P	T	H	V	V	H	S	A	A	A	Y	K
Template Known Secondary structure								T	T	T	S											G	G	G	T										S	S	S		G	G	G	S		S		T	T								T	T															S										S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	K	A	E	S	E	P	E	F	A	Q	L	I	N	A	T	S	V	E	A	I	A	K	A	A	N	E	V	G	A	W	V	I	H	Y	S	T	D	Y	V	F	P	G	N	G	D	M	P	W	L	E	T	D	A	T	A	P	L	N	V	Y	G	E	T	K	L	A	G	E	K	A	L	Q	E	Y	C	A	K	H
Query Conservation
Alig confidence													.	.
Template Conservation													.	.
Template Sequence		D	P	D	D	W	A	E	D	A	A	T	.	.	N	V	Q	G	S	I	N	V	A	K	A	A	S	K	A	G	V	K	R	L	L	N	F	Q	T	A	L	C	Y	G	R	P	A	T	V	P	I	P	I	D	S	P	T	A	P	F	T	S	Y	G	I	S	K	T	A	G	E	A	F	L	M	M	S	D	V	P	V
Template Known Secondary structure			T	T									.	.		T													T	T		S								G	G	G	G		S		S	S	S	S	B		T	T	S						S														T	T		S	S
Template Predicted Secondary structure													.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.			.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	F	R	T	S	W	V	Y	A	G	K	G	N	N	F	A	K	T	M	L	R	L	A	K	E	R	E	E	L	A	V	I	N	D	Q	F	G	A	P	T	G	A	E	L	L	A	D	C	T	A	H	A	I	R	V	A	L	N	K	P	D	V	A	G	L	Y	H	L	V	A	S	G	T	T	T	W	Y	D	Y
Query Conservation
Alig confidence																																																								.	.	.	.
Template Conservation																																																								.	.	.	.
Template Sequence		V	S	L	R	L	A	N	V	T	G	P	R	L	A	I	G	P	I	P	T	F	Y	K	R	L	K	A	G	Q	K	C	F	C	S	D	T	V	R	D	F	L	D	M	S	D	F	L	A	I	A	D	L	S	L	.	.	.	.	Q	E	G	R	P	T	G	V	F	N	V	S	T	G	E	G	H	S	I	K	E	V
Template Known Secondary structure												T	T			S	S											T	T							S																			T	.	.	.	.	S	T	T									S		S
Template Predicted Secondary structure																																																								.	.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.					.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.
Query SS confidence																																																								.
Query Sequence		A	A	L	V	F	E	E	A	R	K	A	G	I	P	L	A	L	N	K	L	N	A	V	P	T	T	A	Y	P	T	P	A	R	R	P	H	N	S	R	L	N	T	E	K	F	Q	Q	N	F	A	L	V	L	P	.	D	W	Q	V	G	V	K	R	M	L	N	E	L	F	T	T	T
Query Conservation																																																								.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	D	V	V	L	D	Y	V	G	A	P	V	P	V	V	A	P	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	D	D	V	P	S	V	V	L	D	P	S	K	T	E	T	E	F	G	W	K	A	K	V	D	F	K	D	T	I	T	G	Q	L	A	W	Y	D	K	Y	G
Template Known Secondary structure										T										T	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S		S	B			B															S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.														.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions