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Job DescriptionP37760
Confidence100.00%DateThu Jan 5 11:57:33 GMT 2012
Rank2Aligned Residues294
% Identity14%Templatec1z7eC_
PDB info PDB header:hydrolaseChain: C: PDB Molecule:protein arna; PDBTitle: crystal structure of full length arna
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.... .....30..... ....40.........50.........60......
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Query Sequence  MNILLFGKTGQVGWELQRALAPLG. NLIAFDVHSTD. . . . . . . . . . . . . YCGDFSNPEGVAETVRSIRPDIIVNAAAHTA
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Template Sequence  TRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVK. KCDVVLPLVAIAT
Template Known Secondary structure  TTTSSSSS

TTTGGGTT
TT

TTT
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   316...320.........330.........340.........350.........360.........370.........380. ........390....
 
   67..70.........80.........90.........100.........110.........120... ......130.........
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Query Sequence  VDKAESEPEFAQLINATSVEAIAKAANEVGAWVIHYSTDYVFPGNGDMPWLETDATA. . . . . . . PLNVYGETKLAGEKAL
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Template Sequence  PIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVI
Template Known Secondary structure  TSTTT


GGGGBT

SSSB
TTT


B


TT
TT
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   395....400.........410.........420.........430.........440.........450.........460.........470....
 
   140.. .......150.........160. ........170.........180 .........190.........200...
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Query Sequence  QEY. . . . CAKHLIFRTSWVYAGKGNN. . . . . . . . . . FAKTMLRLAKEREELAVIN. . DQFGAPTGAELLADCTAHAIRVA
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Template Sequence  WAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENA
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SSTTSS
TTT
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GGG


TG
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   475....480.........490.........500.........510.........520.........530.........540.........550....
 
   204.....210.........220 .........230.........240....... ..250.........260.........270........
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Query Sequence  LNKPDVAGLYHLVASGT. TTWYDYAALVFEEARKAGIPLALNKLN. . . . AVPTTAYPTPARRPHNSRLNTEKFQQNFALV
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Template Sequence  . GNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWE
Template Known Secondary structure  .GGTTTT

GGG
TTGGGS





T
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   555....560.........570.........580.........590.........600.........610.........620.........630...
 
   279280 .........290......
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Query Sequence  LP. DWQVGVKRMLNELFTT
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Template Sequence  PKIDMQETIDETLDFFLRT
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   634.....640.........650..
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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