Job Description P0AB96 Confidence 22.39% Date Thu Jan 5 11:14:59 GMT 2012 Rank 260 Aligned Residues 112 % Identity 15% Template c2dhaA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:flj20171 protein; PDBTitle: solution structure of the second rna recognition motif in2 hypothetical protein flj201171 Resolution UNK

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.				.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.		.	.	.	80	.	.
Predicted Secondary structure																																																.	.	.																									.
Query SS confidence																																																.	.	.																									.
Query Sequence		Y	H	N	P	A	C	G	T	S	R	N	T	L	E	M	I	R	N	S	G	T	E	P	T	I	I	H	Y	L	E	T	P	P	T	R	D	E	L	V	K	L	I	A	D	M	G	.	.	.	I	S	V	R	A	L	L	R	K	N	V	E	P	Y	E	E	L	G	L	A	E	D	K	F	.	T	D	D	R	L	I
Query Conservation																																																.	.	.																									.
Alig confidence																																																.	.	.																									.
Template Conservation
Template Sequence		S	G	S	S	G	G	G	T	S	N	E	V	A	Q	F	L	S	K	E	N	Q	V	I	V	R	M	R	G	L	P	F	T	A	T	A	E	E	V	V	A	F	F	G	Q	H	C	P	I	T	G	G	K	E	G	I	L	F	V	T	Y	P	D	G	R	P	T	G	D	A	F	V	L	F	A	C	E	E	Y	A	Q
Template Known Secondary structure				S	S	S															S								S			T	T												T	T	S			T	T	G	G	G	G							T	T	S											S	S
Template Predicted Secondary structure
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		D	F	M	L	Q	H	P	I	L	I	N	.	R	P	I	V	V	T	P	L	G	T	R	L	C	R	P	S	E	V	V	L	E	I	L	P	D	A	Q	K	G	A	F
Query Conservation													.
Alig confidence													.									.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.
Template Sequence		N	A	L	R	K	H	K	D	L	L	G	K	R	Y	I	E	L	F	R	S	.	.	.	.	.	.	T	A	A	E	V	Q	Q	V	L	N	R	F	S	S	A	S	G
Template Known Secondary structure					T	T	T	T			S	S	S									.	.	.	.	.	.													T	T		S	S
Template Predicted Secondary structure																						.	.	.	.	.	.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.							.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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