Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	P	Q	H	D	Q	L	H	R	Y	L	F	E	N	F	A	V	R	G	E	L	V	T	V	S	E	T	L	Q	Q	I	L	E	N	H	D	Y	P	Q	P	V	K	N	V	L	A	E	L	L	V	A	T	S	L	L	T	A	T	L	K
Secondary structure
SS confidence
Disorder		?	?	?	?	?																																																						?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		F	D	G	D	I	T	V	Q	L	Q	G	D	G	P	M	N	L	A	V	I	N	G	N	N	N	Q	Q	M	R	G	V	A	R	V	Q	G	E	I	P	E	N	A	D	L	K	T	L	V	G	N	G	Y	V	V	I	T	I	T	P	S
Secondary structure
SS confidence
Disorder																																								?																					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		E	G	E	R	Y	Q	G	V	V	G	L	E	G	D	T	L	A	A	C	L	E	D	Y	F	M	R	S	E	Q	L	P	T	R	L	F	I	R	T	G	D	V	D	G	K	P	A	A	G	G	M	L	L	Q	V	M	P	A	Q	N	A
Secondary structure
SS confidence
Disorder		?	?	?	?							?																																																	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		Q	Q	D	D	F	D	H	L	A	T	L	T	E	T	I	K	T	E	E	L	L	T	L	P	A	N	E	V	L	W	R	L	Y	H	E	E	E	V	T	V	Y	D	P	Q	D	V	E	F	K	C	T	C	S	R	E	R	C	A	D	A
Secondary structure
SS confidence
Disorder														?		?	?	?			?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Sequence		L	K	T	L	P	D	E	E	V	D	S	I	L	A	E	D	G	E	I	D	M	H	C	D	Y	C	G	N	H	Y	L	F	N	A	M	D	I	A	E	I	R	N	N	A	S	P	A	D	P	Q	V	H
Secondary structure
SS confidence
Disorder				?																																								?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1vzy chain A Region: 5 - 285 Aligned: 278 Modelled: 281 Confidence: 100.0% Identity: 24% PDB header:chaperone Chain: A: PDB Molecule:33 kda chaperonin; PDBTitle: crystal structure of the bacillus subtilis hsp33 Phyre2 PDB 1vq0 chain A Region: 4 - 284 Aligned: 278 Modelled: 281 Confidence: 100.0% Identity: 24% PDB header:chaperone Chain: A: PDB Molecule:33 kda chaperonin; PDBTitle: crystal structure of 33 kda chaperonin (heat shock protein 33 homolog)2 (hsp33) (tm1394) from thermotoga maritima at 2.20 a resolution Phyre2 PDB 1hw7 chain A Region: 4 - 232 Aligned: 229 Modelled: 229 Confidence: 100.0% Identity: 100% PDB header:chaperone Chain: A: PDB Molecule:heat shock protein hsp33; PDBTitle: hsp33, heat shock protein with redox-regulated chaperone activity Phyre2 PDB 1hw7 chain A Region: 4 - 232 Aligned: 229 Modelled: 229 Confidence: 100.0% Identity: 100% Fold: Hsp33 domain Superfamily: Hsp33 domain Family: Hsp33 domain Phyre2 PDB 1i7f chain A Region: 4 - 231 Aligned: 228 Modelled: 228 Confidence: 100.0% Identity: 97% PDB header:chaperone Chain: A: PDB Molecule:heat shock protein 33; PDBTitle: crystal structure of the hsp33 domain with constitutive chaperone2 activity Phyre2 PDB 1vzy chain A domain 1 Region: 5 - 228 Aligned: 221 Modelled: 224 Confidence: 100.0% Identity: 24% Fold: Hsp33 domain Superfamily: Hsp33 domain Family: Hsp33 domain Phyre2 PDB 1vq0 chain A domain 1 Region: 7 - 229 Aligned: 221 Modelled: 223 Confidence: 100.0% Identity: 23% Fold: Hsp33 domain Superfamily: Hsp33 domain Family: Hsp33 domain Phyre2 PDB 1xjh chain A Region: 225 - 285 Aligned: 61 Modelled: 61 Confidence: 99.8% Identity: 100% Fold: HSP33 redox switch-like Superfamily: HSP33 redox switch-like Family: HSP33 redox switch-like Phyre2 PDB 1vzy chain A domain 2 Region: 229 - 285 Aligned: 57 Modelled: 57 Confidence: 99.7% Identity: 30% Fold: HSP33 redox switch-like Superfamily: HSP33 redox switch-like Family: HSP33 redox switch-like Phyre2 PDB 1vq0 chain A domain 2 Region: 230 - 284 Aligned: 54 Modelled: 55 Confidence: 99.6% Identity: 28% Fold: HSP33 redox switch-like Superfamily: HSP33 redox switch-like Family: HSP33 redox switch-like Phyre2 PDB 2jz8 chain A Region: 260 - 274 Aligned: 15 Modelled: 15 Confidence: 67.4% Identity: 27% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein bh09830; PDBTitle: solution nmr structure of bh09830 from bartonella henselae2 modeled with one zn+2 bound. northeast structural genomics3 consortium target bnr55 Phyre2 PDB 2h3e chain B Region: 253 - 273 Aligned: 21 Modelled: 21 Confidence: 59.3% Identity: 24% PDB header:transferase Chain: B: PDB Molecule:aspartate carbamoyltransferase regulatory chain; PDBTitle: structure of wild-type e. coli aspartate transcarbamoylase in the2 presence of n-phosphonacetyl-l-isoasparagine at 2.3a resolution Phyre2 PDB 2fzc chain B domain 2 Region: 253 - 271 Aligned: 19 Modelled: 19 Confidence: 54.2% Identity: 21% Fold: Rubredoxin-like Superfamily: Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain Family: Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain Phyre2 PDB 1yws chain A domain 1 Region: 222 - 290 Aligned: 58 Modelled: 69 Confidence: 50.4% Identity: 24% Fold: Rubredoxin-like Superfamily: CSL zinc finger Family: CSL zinc finger Phyre2 PDB 1pg5 chain B Region: 255 - 280 Aligned: 26 Modelled: 26 Confidence: 48.2% Identity: 19% PDB header:transferase Chain: B: PDB Molecule:aspartate carbamoyltransferase regulatory chain; PDBTitle: crystal structure of the unligated (t-state) aspartate2 transcarbamoylase from the extremely thermophilic archaeon sulfolobus3 acidocaldarius Phyre2 PDB 2jrr chain A Region: 260 - 273 Aligned: 14 Modelled: 14 Confidence: 47.8% Identity: 29% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of q5lls5 from silicibacter2 pomeroyi. northeast structural genomics consortium target3 sir90 Phyre2 PDB 1pg5 chain B domain 2 Region: 255 - 280 Aligned: 26 Modelled: 26 Confidence: 44.6% Identity: 19% Fold: Rubredoxin-like Superfamily: Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain Family: Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain Phyre2 PDB 2elu chain A Region: 258 - 288 Aligned: 31 Modelled: 31 Confidence: 40.8% Identity: 32% PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 5th c2h2 zinc finger of human2 zinc finger protein 406 Phyre2 PDB 2zae chain B Region: 255 - 273 Aligned: 19 Modelled: 19 Confidence: 38.8% Identity: 16% PDB header:hydrolase Chain: B: PDB Molecule:ribonuclease p protein component 4; PDBTitle: crystal structure of protein ph1601p in complex with protein ph1771p2 of archaeal ribonuclease p from pyrococcus horikoshii ot3 Phyre2 PDB 1y6u chain A Region: 238 - 283 Aligned: 45 Modelled: 46 Confidence: 37.3% Identity: 11% PDB header:dna binding protein Chain: A: PDB Molecule:excisionase from transposon tn916; PDBTitle: the structure of the excisionase (xis) protein from2 conjugative transposon tn916 provides insights into the3 regulation of heterobivalent tyrosine recombinases Phyre2 1 c1vzyA_ 2 c1vq0A_ 3 c1hw7A_ 4 d1hw7a_ 5 c1i7fA_ 6 d1vzya1 7 d1vq0a1 8 d1xjha_ 9 d1vzya2 10 d1vq0a2 11 c2jz8A_ 12 c2h3eB_ 13 d2fzcb2 14 d1ywsa1 15 c1pg5B_ 16 c2jrrA_ 17 d1pg5b2 18 c2eluA_ 19 c2zaeB_ 20 c1y6uA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1vzyA_ 100.0 24 PDB header:chaperone Chain: A: PDB Molecule:33 kda chaperonin; PDBTitle: crystal structure of the bacillus subtilis hsp33 2 c1vq0A_ 100.0 24 PDB header:chaperone Chain: A: PDB Molecule:33 kda chaperonin; PDBTitle: crystal structure of 33 kda chaperonin (heat shock protein 33 homolog)2 (hsp33) (tm1394) from thermotoga maritima at 2.20 a resolution 3 c1hw7A_ 100.0 100 PDB header:chaperone Chain: A: PDB Molecule:heat shock protein hsp33; PDBTitle: hsp33, heat shock protein with redox-regulated chaperone activity 4 d1hw7a_ 100.0 100 Fold:Hsp33 domain Superfamily:Hsp33 domain Family:Hsp33 domain 5 c1i7fA_ 100.0 97 PDB header:chaperone Chain: A: PDB Molecule:heat shock protein 33; PDBTitle: crystal structure of the hsp33 domain with constitutive chaperone2 activity 6 d1vzya1 100.0 24 Fold:Hsp33 domain Superfamily:Hsp33 domain Family:Hsp33 domain 7 d1vq0a1 100.0 23 Fold:Hsp33 domain Superfamily:Hsp33 domain Family:Hsp33 domain 8 d1xjha_ 99.8 100 Fold:HSP33 redox switch-like Superfamily:HSP33 redox switch-like Family:HSP33 redox switch-like 9 d1vzya2 99.7 30 Fold:HSP33 redox switch-like Superfamily:HSP33 redox switch-like Family:HSP33 redox switch-like 10 d1vq0a2 99.6 28 Fold:HSP33 redox switch-like Superfamily:HSP33 redox switch-like Family:HSP33 redox switch-like 11 c2jz8A_ 67.4 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein bh09830; PDBTitle: solution nmr structure of bh09830 from bartonella henselae2 modeled with one zn+2 bound. northeast structural genomics3 consortium target bnr55 12 c2h3eB_ 59.3 24 PDB header:transferase Chain: B: PDB Molecule:aspartate carbamoyltransferase regulatory chain; PDBTitle: structure of wild-type e. coli aspartate transcarbamoylase in the2 presence of n-phosphonacetyl-l-isoasparagine at 2.3a resolution 13 d2fzcb2 54.2 21 Fold:Rubredoxin-like Superfamily:Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain Family:Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain 14 d1ywsa1 50.4 24 Fold:Rubredoxin-like Superfamily:CSL zinc finger Family:CSL zinc finger 15 c1pg5B_ 48.2 19 PDB header:transferase Chain: B: PDB Molecule:aspartate carbamoyltransferase regulatory chain; PDBTitle: crystal structure of the unligated (t-state) aspartate2 transcarbamoylase from the extremely thermophilic archaeon sulfolobus3 acidocaldarius 16 c2jrrA_ 47.8 29 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of q5lls5 from silicibacter2 pomeroyi. northeast structural genomics consortium target3 sir90 17 d1pg5b2 44.6 19 Fold:Rubredoxin-like Superfamily:Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain Family:Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain 18 c2eluA_ 40.8 32 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 5th c2h2 zinc finger of human2 zinc finger protein 406 19 c2zaeB_ 38.8 16 PDB header:hydrolase Chain: B: PDB Molecule:ribonuclease p protein component 4; PDBTitle: crystal structure of protein ph1601p in complex with protein ph1771p2 of archaeal ribonuclease p from pyrococcus horikoshii ot3 20 c1y6uA_ 37.3 11 PDB header:dna binding protein Chain: A: PDB Molecule:excisionase from transposon tn916; PDBTitle: the structure of the excisionase (xis) protein from2 conjugative transposon tn916 provides insights into the3 regulation of heterobivalent tyrosine recombinases 21 c2jvmA_ not modelled 36.3 31 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of rhodobacter sphaeroides protein2 rhos4_26430. northeast structural genomics consortium3 target rhr95 22 d1zu1a1 not modelled 34.4 21 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:HkH motif-containing C2H2 finger 23 d1nzja_ not modelled 31.9 32 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain 24 d1gtra2 not modelled 30.7 5 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain 25 d2atcb2 not modelled 27.9 25 Fold:Rubredoxin-like Superfamily:Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain Family:Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain 26 c2eodA_ not modelled 27.9 24 PDB header:signaling protein Chain: A: PDB Molecule:tnf receptor-associated factor 4; PDBTitle: solution structure of traf-type zinc finger domains (190-2 248) from human tnf receptor-associated factor 4 27 c2be7E_ not modelled 27.5 25 PDB header:transferase Chain: E: PDB Molecule:aspartate carbamoyltransferase regulatory chain; PDBTitle: crystal structure of the unliganded (t-state) aspartate2 transcarbamoylase of the psychrophilic bacterium moritella profunda 28 d1wiia_ not modelled 27.0 10 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Putative zinc binding domain 29 c2l8eA_ not modelled 26.6 44 PDB header:dna binding protein Chain: A: PDB Molecule:polyhomeotic-like protein 1; PDBTitle: solution nmr structure of fcs domain of human polyhomeotic homolog 12 (hph1) 30 c3mv2A_ not modelled 26.0 13 PDB header:protein transport Chain: A: PDB Molecule:coatomer subunit alpha; PDBTitle: crystal structure of a-cop in complex with e-cop 31 c3q9qB_ not modelled 26.0 16 PDB header:chaperone Chain: B: PDB Molecule:heat shock protein beta-1; PDBTitle: hspb1 fragment second crystal form 32 c3t7vA_ not modelled 25.2 27 PDB header:transferase Chain: A: PDB Molecule:methylornithine synthase pylb; PDBTitle: crystal structure of methylornithine synthase (pylb) 33 c2xvcA_ not modelled 23.8 8 PDB header:cell cycle Chain: A: PDB Molecule:escrt-iii; PDBTitle: molecular and structural basis of escrt-iii recruitment to2 membranes during archaeal cell division 34 d1j09a2 not modelled 23.2 10 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain 35 c2elpA_ not modelled 22.1 29 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 13th c2h2 zinc finger of human2 zinc finger protein 406 36 d1wgea1 not modelled 21.2 16 Fold:Rubredoxin-like Superfamily:CSL zinc finger Family:CSL zinc finger 37 c3mkrB_ not modelled 20.8 27 PDB header:transport protein Chain: B: PDB Molecule:coatomer subunit alpha; PDBTitle: crystal structure of yeast alpha/epsilon-cop subcomplex of the copi2 vesicular coat 38 c2wulB_ not modelled 20.8 17 PDB header:oxidoreductase Chain: B: PDB Molecule:glutaredoxin related protein 5; PDBTitle: crystal structure of the human glutaredoxin 5 with bound2 glutathione in an fes cluster 39 c2ywwA_ not modelled 20.8 19 PDB header:metal binding protein Chain: A: PDB Molecule:aspartate carbamoyltransferase regulatory chain; PDBTitle: crystal structure of aspartate carbamoyltransferase2 regulatory chain from methanocaldococcus jannaschii 40 c2d0oA_ not modelled 20.8 15 PDB header:chaperone Chain: A: PDB Molecule:diol dehydratase-reactivating factor large PDBTitle: strcuture of diol dehydratase-reactivating factor complexed2 with adp and mg2+ 41 c1wysA_ not modelled 20.8 30 PDB header:metal binding protein Chain: A: PDB Molecule:riken cdna 2310008m20 protein; PDBTitle: solution structure of the first zf-an1 domain of mouse2 riken cdna 2310008m20 protein 42 d2yrka1 not modelled 20.7 36 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:HkH motif-containing C2H2 finger 43 c2k5rA_ not modelled 20.6 0 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein xf2673; PDBTitle: solution nmr structure of xf2673 from xylella fastidiosa.2 northeast structural genomics consortium target xfr39 44 c1pqvS_ not modelled 20.1 30 PDB header:transferase/transcription Chain: S: PDB Molecule:transcription elongation factor s-ii; PDBTitle: rna polymerase ii-tfiis complex 45 c1y1yS_ not modelled 20.1 30 PDB header:transferase/transcription/dna-rna hybrid Chain: S: PDB Molecule:transcription elongation factor s-ii; PDBTitle: rna polymerase ii-tfiis-dna/rna complex 46 d1gx5a_ not modelled 19.4 17 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:RNA-dependent RNA-polymerase 47 c2xigA_ not modelled 18.9 21 PDB header:transcription Chain: A: PDB Molecule:ferric uptake regulation protein; PDBTitle: the structure of the helicobacter pylori ferric uptake2 regulator fur reveals three functional metal binding sites 48 c2w0tA_ not modelled 18.9 29 PDB header:transcription Chain: A: PDB Molecule:lethal(3)malignant brain tumor-like 2 protein; PDBTitle: solution structure of the fcs zinc finger domain of human2 lmbl2 49 d1vd4a_ not modelled 18.1 11 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 50 c2l6lA_ not modelled 17.7 24 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily c member 24; PDBTitle: solution structure of human j-protein co-chaperone, dph4 51 c3iufA_ not modelled 17.5 41 PDB header:protein binding Chain: A: PDB Molecule:zinc finger protein ubi-d4; PDBTitle: crystal structure of the c2h2-type zinc finger domain of2 human ubi-d4 52 d1hxra_ not modelled 17.3 33 Fold:Mss4-like Superfamily:Mss4-like Family:RabGEF Mss4 53 d1wfea_ not modelled 17.3 30 Fold:AN1-like Zinc finger Superfamily:AN1-like Zinc finger Family:AN1-like Zinc finger 54 d1nb4a_ not modelled 16.9 17 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:RNA-dependent RNA-polymerase 55 c3cixA_ not modelled 16.5 45 PDB header:adomet binding protein Chain: A: PDB Molecule:fefe-hydrogenase maturase; PDBTitle: x-ray structure of the [fefe]-hydrogenase maturase hyde from2 thermotoga maritima in complex with thiocyanate 56 d2jnya1 not modelled 16.3 8 Fold:Trm112p-like Superfamily:Trm112p-like Family:Trm112p-like 57 c1zu1A_ not modelled 16.3 27 PDB header:rna binding protein Chain: A: PDB Molecule:rna binding protein zfa; PDBTitle: solution structure of the n-terminal zinc fingers of the2 xenopus laevis double stranded rna binding protein zfa 58 c2j6aA_ not modelled 16.2 33 PDB header:transferase Chain: A: PDB Molecule:protein trm112; PDBTitle: crystal structure of s. cerevisiae ynr046w, a zinc finger2 protein from the erf1 methyltransferase complex. 59 d2dkta1 not modelled 15.7 14 Fold:CHY zinc finger-like Superfamily:CHY zinc finger-like Family:CHY zinc finger 60 c1xf7A_ not modelled 15.4 22 PDB header:transcription Chain: A: PDB Molecule:wilms' tumor protein; PDBTitle: high resolution nmr structure of the wilms' tumor2 suppressor protein (wt1) finger 3 61 d1xf7a_ not modelled 15.4 22 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 62 d2fu5a1 not modelled 15.3 33 Fold:Mss4-like Superfamily:Mss4-like Family:RabGEF Mss4 63 d2pk7a1 not modelled 15.3 15 Fold:Trm112p-like Superfamily:Trm112p-like Family:Trm112p-like 64 c1rikA_ not modelled 15.0 22 PDB header:de novo protein Chain: A: PDB Molecule:e6apc1 peptide; PDBTitle: e6-binding zinc finger (e6apc1) 65 c1arfA_ not modelled 14.5 22 PDB header:transcription regulation Chain: A: PDB Molecule:yeast transcription factor adr1; PDBTitle: structures of dna-binding mutant zinc finger domains:2 implications for dna binding 66 d1llmc2 not modelled 14.5 44 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 67 d1tkea2 not modelled 14.4 7 Fold:RRF/tRNA synthetase additional domain-like Superfamily:ThrRS/AlaRS common domain Family:Threonyl-tRNA synthetase (ThrRS), second 'additional' domain 68 c3py7A_ not modelled 14.4 23 PDB header:viral protein Chain: A: PDB Molecule:maltose-binding periplasmic protein,paxillin ld1,protein e6 PDBTitle: crystal structure of full-length bovine papillomavirus oncoprotein e62 in complex with ld1 motif of paxillin at 2.3a resolution 69 d1wima_ not modelled 14.3 14 Fold:RING/U-box Superfamily:RING/U-box Family:RING finger domain, C3HC4 70 d1wpba_ not modelled 14.2 33 Fold:YfbU-like Superfamily:YfbU-like Family:YfbU-like 71 d2dmda2 not modelled 13.9 50 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 72 c2js4A_ not modelled 13.9 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein bb2007; PDBTitle: solution nmr structure of bordetella bronchiseptica protein2 bb2007. northeast structural genomics consortium target3 bor54 73 c2hz7A_ not modelled 13.5 14 PDB header:ligase Chain: A: PDB Molecule:glutaminyl-trna synthetase; PDBTitle: crystal structure of the glutaminyl-trna synthetase from2 deinococcus radiodurans 74 c2jr7A_ not modelled 13.4 16 PDB header:metal binding protein Chain: A: PDB Molecule:dph3 homolog; PDBTitle: solution structure of human desr1 75 d2hf1a1 not modelled 13.2 8 Fold:Trm112p-like Superfamily:Trm112p-like Family:Trm112p-like 76 d1k81a_ not modelled 12.8 23 Fold:Zinc-binding domain of translation initiation factor 2 beta Superfamily:Zinc-binding domain of translation initiation factor 2 beta Family:Zinc-binding domain of translation initiation factor 2 beta 77 d1a1ia3 not modelled 12.8 44 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 78 d2yt9a2 not modelled 12.8 27 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 79 c3ol0C_ not modelled 12.8 23 PDB header:de novo protein Chain: C: PDB Molecule:de novo designed monomer trefoil-fold sub-domain which PDBTitle: crystal structure of monofoil-4p homo-trimer: de novo designed monomer2 trefoil-fold sub-domain which forms homo-trimer assembly 80 d1njqa_ not modelled 12.7 22 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Plant C2H2 finger (QALGGH zinc finger) 81 c3iraA_ not modelled 12.7 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein; PDBTitle: the crystal structure of one domain of the conserved protein from2 methanosarcina mazei go1 82 d1vbka2 not modelled 12.6 8 Fold:THUMP domain Superfamily:THUMP domain-like Family:THUMP domain 83 c2d9kA_ not modelled 12.6 13 PDB header:immune system Chain: A: PDB Molecule:fln29 gene product; PDBTitle: solution structure of the zf-traf domain of fln29 gene2 product 84 c3h5jA_ not modelled 12.5 32 PDB header:lyase Chain: A: PDB Molecule:3-isopropylmalate dehydratase small subunit; PDBTitle: leud_1-168 small subunit of isopropylmalate isomerase (rv2987c) from2 mycobacterium tuberculosis 85 d2ds5a1 not modelled 12.5 38 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:ClpX chaperone zinc binding domain 86 c2pjhA_ not modelled 12.3 12 PDB header:transport protein Chain: A: PDB Molecule:nuclear protein localization protein 4 homolog; PDBTitle: strctural model of the p97 n domain- npl4 ubd complex 87 d1k3sa_ not modelled 12.2 15 Fold:Secretion chaperone-like Superfamily:Type III secretory system chaperone-like Family:Type III secretory system chaperone 88 c1ovxB_ not modelled 12.1 38 PDB header:metal binding protein Chain: B: PDB Molecule:atp-dependent clp protease atp-binding subunit clpx; PDBTitle: nmr structure of the e. coli clpx chaperone zinc binding domain dimer 89 c3e2iA_ not modelled 12.1 14 PDB header:transferase Chain: A: PDB Molecule:thymidine kinase; PDBTitle: crystal structure of thymidine kinase from s. aureus 90 c2hlgA_ not modelled 12.0 29 PDB header:plant protein Chain: A: PDB Molecule:fruit-specific protein; PDBTitle: nmr solution structure of a new tomato peptide 91 c4a17Y_ not modelled 11.9 30 PDB header:ribosome Chain: Y: PDB Molecule:rpl37a; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 2. 92 d2ct1a2 not modelled 11.9 22 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 93 c1x4vA_ not modelled 11.9 20 PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein loc130617; PDBTitle: solution structure of the zf-an1 domain from human2 hypothetical protein loc130617 94 d1kjwa2 not modelled 11.8 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 95 d1e4ft2 not modelled 11.6 8 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 96 c3aiiA_ not modelled 11.5 27 PDB header:ligase Chain: A: PDB Molecule:glutamyl-trna synthetase; PDBTitle: archaeal non-discriminating glutamyl-trna synthetase from2 methanothermobacter thermautotrophicus 97 d1nj1a2 not modelled 11.5 33 Fold:IF3-like Superfamily:C-terminal domain of ProRS Family:C-terminal domain of ProRS 98 c1tr8A_ not modelled 11.4 23 PDB header:chaperone Chain: A: PDB Molecule:conserved protein (mth177); PDBTitle: crystal structure of archaeal nascent polypeptide-associated complex2 (aenac) 99 c2hcuA_ not modelled 11.3 37 PDB header:lyase Chain: A: PDB Molecule:3-isopropylmalate dehydratase small subunit; PDBTitle: crystal structure of smu.1381 (or leud) from streptococcus2 mutans

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0