Return to main results Retrieve Phyre Job Id

Job DescriptionP76224
Confidence1.40%DateThu Jan 5 12:20:51 GMT 2012
Rank82Aligned Residues27
% Identity19%Templated1rp3a2
SCOP infoDNA/RNA-binding 3-helical bundle Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma4 domain
Resolution2.30

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   155....160.........170.........180.
Predicted Secondary structure 







Query SS confidence 


























Query Sequence  LSEKWLLQQVIVLDSLGYSRWQCLNWL
Query Conservation 
  
    
 


  



    
  
Alig confidence 


























Template Conservation 
      
  


  
 

  

    
Template Sequence  LIFYEELPAKEVAKILETSVSRVSQLK
Template Known Secondary structure  TS


TTS
Template Predicted Secondary structure 





Template SS confidence 


























   195....200.........210.........220.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions