Job Description P76224 Confidence 16.71% Date Thu Jan 5 12:20:51 GMT 2012 Rank 14 Aligned Residues 160 % Identity 9% Template d1iwga8 SCOP info Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Resolution 3.50

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence		L	P	S	V	A	P	A	L	A	M	A	M	L	A	I	V	A	W	S	L	S	V	V	D	V	A	I	I	L	G	.	P	G	N	P	P	T	L	A	V	I	S	W	Q	W	L	T	Q	G	D	I	D	Q	Q	T	K	G	A	L	A	S	L	L	L	M	L	L	L	A	A	Y	V	L	L	S	Y	L	L	W	R
Query Conservation																																.
Alig confidence																																.
Template Conservation
Template Sequence		A	P	S	L	Y	A	I	S	L	I	V	V	F	L	C	L	A	A	L	Y	E	S	W	S	I	P	F	S	V	M	L	V	V	P	L	G	V	I	G	A	L	L	A	A	T	F	R	G	L	T	N	D	V	Y	F	Q	V	G	L	L	T	T	I	G	L	S	A	K	N	A	I	L	I	V	E	F	A	K	D	L
Template Known Secondary structure																				T	T		S	S	S					G	G	G																T	T			B
Template Predicted Secondary structure
Template SS confidence
		873	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	W	R	R	T	I	P	R	V	D	G	V	R	K	P	A	T	P	L	L	P	G	N	T	L	A	I	F	L	P	L	T	G	V	L	C	V	V	L	L	A	I	L	A	D	Q	S	T	I	N	S	E	A	L	I	N	S	L	T	M	G	L	V	A	T	F	I	A	L	L	L	L	L	L	W	L	E	W	G	P
Query Conservation
Alig confidence																																										.	.	.
Template Conservation																																										.	.	.
Template Sequence		M	D	K	E	G	K	G	L	I	E	A	T	L	D	A	V	R	M	R	L	R	P	I	L	M	T	S	L	A	F	I	L	G	V	M	P	L	V	I	S	.	.	.	T	G	A	G	S	G	A	Q	N	A	V	G	T	G	V	M	G	G	M	V	T	A	T	V	L	A	I	F	F	V	P	V	F	F	V	V	V
Template Known Secondary structure		T	T	S	S				T	T									T	T																				T	T	.	.	.		S	S	S																				T	T	T	T	S	S	S	S	S	S
Template Predicted Secondary structure																																										.	.	.
Template SS confidence
		953	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.				.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.
		342	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	R	R	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	R	R	F
Template Known Secondary structure					T
Template Predicted Secondary structure
Template SS confidence
		1030	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions