Job Description P76224 Confidence 100.00% Date Thu Jan 5 12:20:51 GMT 2012 Rank 1 Aligned Residues 415 % Identity 14% Template c2r6gF_ PDB info PDB header:hydrolase/transport protein Chain: F: PDB Molecule:maltose transport system permease protein malf; PDBTitle: the crystal structure of the e. coli maltose transporter Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	A	A	V	G	A	L	L	I	A	L	L	V	I	V	A	L	W	P	G	P	K	W	Q	R	M	C	A	R	L	P	W	L	L	A	I	P	H	V	A	F	A	T	S	A	L	L	L	F	A	D	G	G	L	L	Y	D	Y	F	P	Y	F	T	P	P	M	D	R	F	G	I	G	L	G	L	T	L	A	V
Query Conservation
Alig confidence																										.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	V	L	G	L	L	G	L	L	V	G	Y	L	V	V	L	M	Y	A	Q	G	E	Y	L	.	.	F	A	I	T	T	L	I	L	S	S	A	G	L	Y	I	F	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	R	K	A	Y	A	W	R	Y	V	Y	P	G	M	A	G	M	G	L	F
Template Known Secondary structure														T						G	G	G				.	.																	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S			T	T
Template Predicted Secondary structure																										.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.			.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.																		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160			.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.
Query SS confidence																					.	.
Query Sequence		K	E	S	A	F	L	L	W	I	L	A	A	V	L	S	E	K	W	L	.	.	L	Q	Q	V	I	V	L	D	S	L	G	Y	S	R	W	Q	C	L	N	W	L	L	L	P	S	V	A	P	A	L	A	M	A	M	L	A	I	V	A	W	S	L	S	V	V	D	V	A	I	I	L	G	P	G	N	P	P	T	L
Query Conservation																					.	.
Alig confidence																					.	.
Template Conservation
Template Sequence		V	L	F	P	L	V	C	T	I	A	I	A	F	T	N	Y	S	S	T	N	Q	L	T	F	E	R	A	Q	E	V	L	L	D	R	S	W	Q	A	G	K	T	Y	N	F	G	L	Y	P	A	G	D	E	W	Q	L	A	L	S	D	G	E	T	G	K	N	Y	L	S	D	A	F	K	F	G	G	E	Q	K	L	Q
Template Known Secondary structure		T										G	G	G	B			S	S	T	T		B										T	T						S											T	T									T	T	T	T								B			S	S
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		A	V	I	S	W	Q	W	L	T	Q	G	D	I	D	Q	Q	T	K	G	A	L	A	S	L	L	L	M	L	L	L	A	A	Y	V	L	L	S	Y	L	L	W	R	S	W	R	R	T	I	P	R	V	D	G	V	R	K	P	A	T	P	L	L	P	G	N	T	L	A	I	F	L	P	L	T	G	V	L	C	.	.
Query Conservation																																																																																.	.
Alig confidence																																																																																.	.
Template Conservation
Template Sequence		L	K	E	T	T	A	Q	P	E	G	E	R	A	N	L	R	V	I	T	Q	N	R	Q	A	L	S	D	I	T	A	I	L	P	D	G	N	K	V	M	M	S	S	L	R	Q	F	S	G	T	Q	P	L	Y	T	L	D	G	D	G	T	L	T	N	N	Q	S	G	V	K	Y	R	P	N	N	Q	I	G	F	Y	Q
Template Known Secondary structure							S			S	S											T												S	S	S							S	S	S								S					T	T	S					T	T	T								T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
																									298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.								.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	L	L	A	I	L	A	D	Q	S	T	I	N	S	E	A	L	I	N	S	L	T	M	G	L	V	A	T	F	I	A	L	L	L	L	L	L	W	L	E	W	G	P	Q	R	R	.	.	.	.	.	.	.	Q	L	W
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	I	T	A	N	W	G	D	E	K	L	S	P	G	Y	T	V	T	T	G	W	K	N	F	T	R	V	F	T	D	E	G	I	Q	K	P	F	L	A	I	F	V	W	T	V	V	F	S	L	I	T	V	F	L	T	V	A	V	G	M	V	L	A	C	L	V	Q	W	E	A	L	R	G	K	A	V	Y	R	V	L
Template Known Secondary structure									S				S	S		B			B		T	T	T	T	T	S	G	G	G	T		T	T	T	S	T	T																															T		S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.																					.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	W	L	P	I	L	L	P	A	L	P	L	V	A	G	Q	Y	T	L	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	L	K	L	D	G	S	W	T	A	V	V	W	G	H	L	L	W	V	M	P	W	M	L	F	I	L	Q	P	A	W	Q	R	I	D	S	R	L	I
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	I	L	P	Y	A	V	P	S	F	I	S	I	L	I	F	K	G	L	F	N	Q	S	F	G	E	I	N	M	M	L	S	A	L	F	G	V	K	P	A	W	F	S	D	P	T	T	A	R	T	M	L	I	I	V	N	T	W	L	G	Y	P	Y	M	M	I	L	C	M	G	L	L	K	A	I	P	D	D	L	Y
Template Known Secondary structure		T	T					S													T		S	S	S	S									T	S	S					T	T	T	S																												G	G	G	S		T
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.													.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Query Sequence		L	I	A	Q	T	L	G	W	S	R	A	K	I	F	F	Y	V	K	C	P	L	M	L	R	P	V	L	I	A	F	A	V	G	F	A	V	G	I	A	Q	Y	M	P	T	L	W	L	G	A	G	.	.	.	.	.	.	.	.	.	.	.	.	R	F	P	T	L	T	T	E	A	V	A	L	S	S	G	G	.	.
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Template Conservation
Template Sequence		E	A	S	A	M	D	G	A	G	P	F	Q	N	F	F	K	I	T	L	P	L	L	I	K	P	L	T	P	L	M	I	A	S	F	A	F	N	F	N	N	F	V	L	I	Q	L	L	T	N	G	G	P	D	R	L	G	T	T	T	P	A	G	Y	T	D	L	L	V	N	Y	T	Y	R	I	A	F	E	G	G	G
Template Known Secondary structure							T				S							T	T	G	G	G	T																	T										S	S		S	B		S	S		S	S			B	S	S												T	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
				474	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	S	N	G	I	L	A	A	Q	A	L	W	Q	L	L	L	P	L	I	I	F	A	L
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		G	Q	D	F	G	L	A	A	A	I	A	T	L	I	F	L	L	V	G	A	L	A	I	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.