Return to main results Retrieve Phyre Job Id

Job DescriptionP0A8P8
Confidence99.89%DateThu Jan 5 11:08:27 GMT 2012
Rank7Aligned Residues180
% Identity98%Templated1a0pa2
SCOP infoDNA breaking-rejoining enzymes DNA breaking-rejoining enzymes Lambda integrase-like, catalytic core
Resolution2.50

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   111........120.........130.........140.........150.........160.........170.........180.........190
Predicted Secondary structure 













































Query SS confidence 















































































Query Sequence  KDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLE
Query Conservation                                    

 
  
       
                               
Alig confidence 















































































Template Conservation 
 

 

   

           
      
   



  

  
   

                              
Template Sequence  KDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLE
Template Known Secondary structure 




S
TTS


TT
BGGGTTTT
SSS


Template Predicted Secondary structure 





































Template SS confidence 















































































   111........120.........130.........140.........150.........160.........170.........180.........190
 
   191........200.........210.........220.........230.........240.........250.........260.........270
Predicted Secondary structure 







































Query SS confidence 















































































Query Sequence  TYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGH
Query Conservation                                                     
 
 



 

 
   
     
   


Alig confidence 















































































Template Conservation                                                       
  
 
  
 
   
     
   


Template Sequence  TYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLSD
Template Known Secondary structure  TTT



BSSB
TTSSB

TT

GGG


SS
GGGSS



Template Predicted Secondary structure 






































Template SS confidence 















































































   191........200.........210.........220.........230.........240.........250.........260.........270
 
   271........280.........290..
Predicted Secondary structure 




Query SS confidence 





















Query Sequence  SDLSTTQIYTHVATERLRQLHQ
Query Conservation      

  
             
Alig confidence 

..

















Template Conservation   
..

  
     
      
Template Sequence  LS. . TTQIYTHVATERLRQLHQ
Template Known Secondary structure 

..
Template Predicted Secondary structure  ..


Template SS confidence 





















   273. .....280.........290..
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions