Job Description P0A8P8 Confidence 99.86% Date Thu Jan 5 11:08:27 GMT 2012 Rank 8 Aligned Residues 160 % Identity 18% Template c3nkhB_ PDB info PDB header:recombination Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of integrase from mrsa strain staphylococcus aureus Resolution 2.50 Å

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		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.																						170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	D	K	A	M	L	E	V	L	Y	A	T	G	L	R	V	S	E	L	V	G	L	T	M	S	D	I	S	L	R	Q	G	V	V	R	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	G	K	G	N	K	E	R	L	V	P	L	G	E	E	A	V	Y	W	L	E	T	Y
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	V	A	L	X	T	E	F	Q	A	L	N	G	X	R	I	G	E	X	L	A	I	Q	N	E	D	I	D	F	D	N	K	S	L	N	I	N	G	T	I	H	W	F	H	D	E	S	G	G	F	G	V	K	D	T	T	K	T	E	S	S	Y	R	T	I	G	L	S	S	R	S	C	E	I	L	K	K	A	I	L
Template Known Secondary structure																						T		B	G	G	G			T	T	T	T														T	T	S									S	S	S
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	H	G	R	P	W	L	L	N	G	V	S	I	D	V	L	F	P	S	Q	R	A	Q	Q	M	T	R	Q	T	F	W	H	R	I	K	H	Y	A	V	L	A	G	I	D	S	E	K	L	S	P	H	V	L	R	H	A	F	A	T	H	L	L	N	H	G	A	D	L	R	V	V	Q	M	L	L	G	H	S	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	N	K	K	D	S	K	W	N	D	G	Y	L	N	R	N	F	V	F	T	N	H	K	G	N	P	X	Q	T	E	R	F	N	K	I	L	R	E	A	A	K	D	V	G	I	D	K	E	V	S	S	H	I	L	R	H	S	H	I	S	L	L	S	Q	Q	G	V	S	L	K	A	I	X	D	R	V	G	H	S	D
Template Known Secondary structure											T	T					S	B	S	S	B		T	T	S	S	B																	T	T			S			S															T	T												S	T	T
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		273	.	.	.		.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		L	S	T	T	.	Q	I	Y	T	H	V	A	T	E	R	L	R	Q	L	H	Q	Q
Query Conservation						.
Alig confidence						.
Template Conservation
Template Sequence		H	R	T	T	L	S	I	Y	S	H	V	T	E	Q	X	D	K	D	X	X	N	K
Template Known Secondary structure																			T
Template Predicted Secondary structure
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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