Job Description P0A8P8 Confidence 99.97% Date Thu Jan 5 11:08:27 GMT 2012 Rank 6 Aligned Residues 267 % Identity 16% Template c1z1bA_ PDB info PDB header:dna binding protein/dna Chain: A: PDB Molecule:integrase; PDBTitle: crystal structure of a lambda integrase dimer bound to a2 coc' core site Resolution 3.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	I	E	Q	F	L	D	A	L	W	L	E	K	N	L	A	E	N	T	L	N	A	Y	R	R	D	L	S	M	M	V	E	W	L	H	H	R	G	L	T	L	A	T	A	Q	S	D	D	L	Q	A	L	L	A	E	R	L	E	G	G	Y	K	A	T	S	S	A	R	L	L	S	A	V	R	R	L	F	Q	Y
Query Conservation
Alig confidence													.																									.	.																								.
Template Conservation													.																									.	.																								.
Template Sequence		S	W	L	D	R	Y	E	K	I	L	A	.	S	R	G	I	K	Q	K	T	L	I	N	Y	M	S	K	I	K	A	I	R	R	G	L	P	.	.	D	A	P	L	E	D	I	T	T	K	E	I	A	A	M	L	N	G	Y	I	D	E	G	.	K	A	A	S	A	K	L	I	R	S	T	L	S	D	A	F	R	E
Template Known Secondary structure													.	T	T	T																				S		.	.	S		B	G	G	G																T	T	.
Template Predicted Secondary structure													.																									.	.																								.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.			.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.		.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Y	R	E	K	F	R	E	D	D	P	S	A	H	L	A	S	P	K	L	P	Q	R	L	P	K	D	L	S	E	A	Q	V	E	R	L	L	Q	A	P	L	I	D	Q	P	L	E	L	R	D	K	A	M	L	E	V	L	Y	A	T	G	L	R	V	S	E	L	V	G	L	T	M	S	D	I	S	L	R	Q	G
Query Conservation
Alig confidence																																									.	.	.	.
Template Conservation																																									.	.	.	.
Template Sequence		A	I	A	E	G	H	I	T	T	N	H	V	A	A	T	R	A	A	K	S	K	V	R	R	S	R	L	T	A	D	E	Y	L	K	I	Y	Q	A	A	.	.	.	.	E	S	S	P	C	W	L	R	L	A	M	E	L	A	V	V	T	G	Q	R	V	G	D	L	C	E	M	K	W	S	D	I	V	D	G	Y	L
Template Known Secondary structure					T	T	S		S	S		T	T	T	T	S									B															T	.	.	.	.	T	S	S																						T	T		B	G	G	G			T	T
Template Predicted Secondary structure																																									.	.	.	.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.					.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	R	V	I	G	K	G	N	K	E	R	L	V	P	L	G	E	E	A	V	Y	W	L	E	T	Y	L	E	H	G	R	P	W	L	L	N	G	V	S	I	D	V	L	F	P	S	Q	R	A	Q	Q	M	T	R	Q	T	F	W	H	R	I	K	H	Y	A	V	L	A	G	I	D	S	E	K	L	S	P	H	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	V	E	Q	S	K	T	G	V	K	I	A	I	P	T	A	L	H	I	D	A	L	G	I	S	M	K	E	T	L	D	K	C	K	E	I	L	G	G	E	T	I	I	A	S	T	R	R	E	P	L	S	S	G	T	V	S	R	Y	F	M	R	A	R	K	A	S	G	L	S	F	E	G	D	P	P	T	F	H	E
Template Known Secondary structure						T	T	T								T	T				T	T	T	T														T		S	S	B	S	S			T	T	S																				T				S	S	B				T	T
Template Predicted Secondary structure
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	H	A	F	A	T	H	L	L	N	H	G	A	D	L	R	V	V	Q	M	L	L	G	H	S	D	L	S	T	T	Q	I	Y	T	H
Query Conservation
Alig confidence					.
Template Conservation					.
Template Sequence		L	R	S	.	L	S	A	R	L	Y	E	K	Q	I	S	D	K	F	A	Q	H	L	L	G	H	K	S	D	T	M	A	S	Q	R	D	D
Template Known Secondary structure					.										T										T		S	S					T
Template Predicted Secondary structure					.
Template SS confidence
		310	.	.		.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions