Job Description P77308 Confidence 99.65% Date Wed Jan 25 15:21:11 GMT 2012 Rank 7 Aligned Residues 295 % Identity 14% Template c3fh6F_ PDB info PDB header:transport protein Chain: F: PDB Molecule:maltose transport system permease protein malf; PDBTitle: crystal structure of the resting state maltose transporter from e.2 coli Resolution 4.50 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	W	S	I	L	R	Q	R	C	W	G	L	V	L	V	V	A	G	V	C	V	I	T	F	I	I	S	H	L	I	P	G	D	P	A	R	L	L	A	G	D	R	A	S	D	A	I	V	E	N	I	R	Q	Q	L	G	L	D	Q	P	L	Y	V	Q	F	Y	R	Y	V	S	D	L	F	H	G	D	L	G	T	S
Query Conservation
Alig confidence																														.	.	.	.	.													.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.													.	.	.	.	.	.	.	.	.	.
Template Sequence		I	T	T	L	I	L	S	S	A	G	L	Y	I	Y	V	Y	P	G	M	A	G	M	G	L	F	V	L	F	.	.	.	.	.	P	L	V	C	T	I	A	I	A	F	T	N	.	.	.	.	.	.	.	.	.	.	Y	S	S	T	N	Q	L	T	F	E	R	A	Q	E	V	L	L	D	R	S	K	N	F	T	R
Template Known Secondary structure																											T			.	.	.	.	.							T	T	S	S	S	S	.	.	.	.	.	.	.	.	.	.		S	S	S		S	S											T				T	T
Template Predicted Secondary structure																														.	.	.	.	.													.	.	.	.	.	.	.	.	.	.
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.						.	.	.	.	.	.	.	.	80	.	.	.											.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	T	G	R	P	V	L	E	E	L	R	I	F	F	P	A	T	L	E	L	A	F	G	A	L	L	L	A	L	L	I	G	I	P	L	G	I	L	S	A	V	W	R	N	R	W	L	D	H	L	V	R	I	M	A	I	T	G	I	S	T	P	A	F	W	L	G	L	G	V	I	V	L	F	Y	G	H	L	Q
Query Conservation
Alig confidence																																													.
Template Conservation																																													.
Template Sequence		V	F	T	D	E	G	I	Q	K	P	F	L	A	I	F	V	W	T	V	V	F	S	L	I	T	V	F	L	T	V	A	V	G	M	V	L	A	C	L	V	Q	W	E	.	A	L	R	G	K	A	V	Y	R	V	L	L	I	L	P	Y	A	V	P	S	F	I	S	I	L	I	F	K	G	L	F	N	Q	S	F	G
Template Known Secondary structure				S		S	S	S		S																																T		S	.	S	S	S															S		S											S		S	S	S	S
Template Predicted Secondary structure																																													.
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	P	G	G	G	R	L	D	D	W	L	D	P	P	T	H	V	T	G	F	Y	L	L	D	A	L	L	E	G	N	G	E	V	F	F	N	A	L	Q	H	L	I	L	P	A	L	T	L	A	F	V	H	L	G	I	V	A	R	Q	I	R	S	A	M	L	E	Q	L	S	E	D	Y	I	R	T	A	R	A	S
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.
Template Sequence		E	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	M	M	L	S	A	L	F	G	V	K	P	A	W	F	S	D	P	T	T	A	R	T	M	L	I	I	V	N	T	W	L	G	Y	P	Y	M	M	I	L	C	M	G	L	.	L	K	A	I	P	D	D	L	Y	E	A	S	A	M	D
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								S	S					S	S	S	S																												.				S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.
Template SS confidence
		346	.																			.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.		.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.															.	.	.	.	290	.	.	.	.					.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.
Query Sequence		G	L	P	G	W	Y	I	V	L	C	Y	A	L	P	N	A	L	I	P	S	I	T	V	L	G	L	A	L	G	D	L	L	Y	G	A	V	L	T	E	T	V	F	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	P	G	M	G	A	W	V	V	.	.	.	.	T	S	I	Q	A	L	D	F	P	A
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.
Alig confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.
Template Conservation
Template Sequence		G	A	G	P	F	Q	N	F	F	K	I	T	L	P	L	L	I	K	P	L	T	P	L	M	I	A	S	F	A	F	N	F	N	N	F	V	L	I	Q	L	L	T	N	G	G	P	D	R	L	G	T	T	T	P	A	G	Y	T	D	L	L	V	N	Y	T	Y	R	I	A	F	E	G	G	G	G	Q	D	F	G	L
Template Known Secondary structure					S							T	T	T	T	T	T																	T										S	S		S			S	S		S	S	S			S	S										T	T		S	S	S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure
Query SS confidence
Query Sequence		V	M	G	F	A	V	V	V	S	F	A	Y	V	L	V	N	L	V	V	D	L	L	Y	L	W	I	D	P	R	I	G	R	G	G	G	E
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.
Template Sequence		A	A	A	I	A	T	L	I	F	L	L	V	G	A	L	A	I	V	N	L	.	.	.	.	.	.	.	.	K	A	T	R	M	K	F	D
Template Known Secondary structure																						.	.	.	.	.	.	.	.			S	S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.
Template SS confidence
		487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.									.	.	.	510	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions