 |
Job Description | P45552 | Confidence | 46.02% | Date | Thu Jan 5 12:03:11 GMT 2012 |
Rank | 348 | Aligned Residues | 40 |
% Identity | 13% | Template | d1yg2a_ |
SCOP info | DNA/RNA-binding 3-helical bundle
| "Winged helix" DNA-binding domain
| PadR-like
|
Resolution | 2.20 |
|
  |   |
39 | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . |
Predicted Secondary structure |   |
 |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
C | R | S | S | V | G | L | T | Q | A | A | L | K | T | L | E | S | S | G | A | I | R | I | E | R | R | G | R | N | G | S | Y | L | V | E | M | D | N | K | A | L | L | T |
Query Conservation |   |
  |   |
|
|
|   |
|
|   |   |
|   |   |   |
|   |   |   |
|   |
|   |   |   |   |
|   |   |   |
|
|   |
|   |   |   |   |   |   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|   |
|
|
|
|   |   |
|   |
|
|
|   |   |
|
|
| . | . | . |   |   |   |
|
|   |
|   |
|
|   |   |
|
|   |   |
|   |   |
Template Sequence |   |
W | K | A | S | H | Q | Q | V | Y | R | E | L | N | K | M | G | E | Q | G | L | V | . |
. |
. |
T | C | V | L | E | V | Y | S | I | T | Q | A | G | R | S | A | L | G | E |
Template Known Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S |  | . | . | . |  |  |
|
|
|
|  |  |  |
|  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . | . |
|
|
|
|  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
33 | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | |
|
|
. | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|