Job Description P45552 Confidence 98.07% Date Thu Jan 5 12:03:11 GMT 2012 Rank 22 Aligned Residues 243 % Identity 15% Template c3f6tA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of aspartate aminotransferase (e.c. 2.6.1.1)2 (yp_194538.1) from lactobacillus acidophilus ncfm at 2.15 a3 resolution Resolution 2.15 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100						.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.
Query Sequence		C	R	S	S	V	G	L	T	Q	A	A	L	K	T	L	E	S	S	G	A	I	R	I	E	R	R	G	R	N	G	S	Y	L	V	E	M	D	N	K	A	L	L	T	H	V	D	I	N	N	V	V	C	A	M	P	L	P	Y	T	R	L	Y	.	.	.	.	.	E	G	L	A	S	G	L	K	A	Q	F	D	G
Query Conservation																																																																.	.	.	.	.
Alig confidence																							.	.																																								.	.	.	.	.
Template Conservation																							.	.
Template Sequence		F	E	I	S	R	K	X	L	A	L	A	Q	K	N	E	K	S	N	I	F	L	.	.	N	A	G	R	G	N	P	N	W	I	Q	T	L	A	R	L	A	F	V	R	L	V	Q	F	G	V	T	E	S	K	L	T	I	N	N	G	I	X	A	G	Y	I	N	T	D	G	I	R	E	R	L	F	A	F	L	D	P
Template Known Secondary structure																G	G	G					.	.		T						S																						T	T	T				T	T								T	T											T
Template Predicted Secondary structure																							.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		114	.	.											.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.						.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.
Query Sequence		I	P	F	.	.	.	.	.	.	.	.	.	.	Y	Y	A	H	M	R	G	A	D	I	R	V	E	C	L	L	N	G	V	Y	D	M	A	V	V	S	R	L	A	A	E	S	Y	L	T	Q	K	G	L	C	L	A	L	E	L	G	P	.	.	.	.	.	H	T	Y	V	G	E	H	Q	L	I	C	R	K	G	E
Query Conservation					.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.
Template Conservation
Template Sequence		D	K	N	D	E	D	K	F	L	I	D	A	V	N	Y	C	H	T	E	L	G	L	N	R	D	K	V	V	A	E	W	V	N	G	A	V	A	N	N	Y	P	V	P	D	R	C	L	V	N	T	E	K	I	I	N	Y	F	L	Q	E	L	S	Y	K	D	A	N	L	A	E	Q	T	D	L	F	P	T	E	G	G
Template Known Secondary structure		T	T																	T	T																	T		S			S	S	S	S																		T	T	T				G	G	G
Template Predicted Secondary structure
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220			.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure																																												.	.
Query SS confidence																																												.	.
Query Sequence		S	A	N	V	K	R	V	G	L	D	N	R	S	A	D	Q	K	I	M	T	D	V	F	F	G	G	S	D	V	E	R	V	D	L	S	Y	H	E	S	L	Q	R	.	.	I	V	K	G	D	V	D	A	V	I	W	N	V	V	A	E	N	E	L	T	M	L	G	L	E	A	T	P	L	T	D	D	P	R	F	L
Query Conservation																																												.	.
Alig confidence						.	.	.	.	.	.																																	.	.										.	.	.	.	.
Template Conservation						.	.	.	.	.	.																																												.	.	.	.	.
Template Sequence		T	A	A	I	.	.	.	.	.	.	V	Y	A	F	H	S	L	A	E	N	H	L	L	K	K	G	D	K	I	A	I	N	E	P	I	F	T	P	Y	L	R	I	P	E	L	K	D	Y	E	L	V	E	V	.	.	.	.	.	D	L	H	S	Y	E	K	N	D	W	E	I	E	P	N	E	I	E	K	L	K	D
Template Known Secondary structure						.	.	.	.	.	.										T	T	S	S		T	T							S	S							T	S	G	G	G	G	G	S						.	.	.	.	.						T	T	T	T	S											S
Template Predicted Secondary structure						.	.	.	.	.	.																																												.	.	.	.	.
Template SS confidence
		173	.	.	.							.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.						220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	T	E	A	V	V	L	T	R	V	D	D	Y	P	M	Q	Q	L	L	R	A	V	V	D	K	H	A	L	L	A	H	Q	Q	R	V	V	S	G	E	Q	E	P
Query Conservation
Alig confidence																		.	.	.	.	.
Template Conservation																		.	.	.	.	.
Template Sequence		P	S	I	K	A	L	I	V	V	N	P	T	N	P	T	S	.	.	.	.	.	K	E	F	D	T	N	A	L	N	A	I	K	Q	A	V	E	K	N	P	K	L	X
Template Known Secondary structure		T	T								S	S		T	T	T		.	.	.	.	.	B																		T	T
Template Predicted Secondary structure																		.	.	.	.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.						.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions