 |
Job Description | P45552 | Confidence | 50.50% | Date | Thu Jan 5 12:03:11 GMT 2012 |
Rank | 324 | Aligned Residues | 103 |
% Identity | 9% | Template | c3dzzB_ |
PDB info |
PDB header:transferase | Chain: B: PDB Molecule:putative pyridoxal 5'-phosphate-dependent c-s lyase; |
PDBTitle: crystal structure of a putative plp-dependent aminotransferase2 (lbul_1103) from lactobacillus delbrueckii subsp. at 1.61 a3 resolution
|
Resolution | 1.61 Å |
|
 |
  |   |
167 | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | G | E | H | Q | L | I | C | R | K | G | E | S | A | N | V | K | R | V | G | L | D | N | R | S | A | D | Q | K | I | M | T | D | V | F | F | G | G | S | D | V | E | R | V | D | L | S | Y | H | E | S | L | Q | R | I | V | K | G | D | V | D | A | V | I | W | N | V | V | A | E | N | E | L | T | M | L | G | L | E | A |
Query Conservation |   |
  |   |   |
|   |
|
|   |   |   |   |   |   |   |   |   |   |
|
|   |
|
|   |   |
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |
|
|   |   |   |   |   |   |   |
|
|
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|   |
|
|   |
|   |   |   |
|
|   | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |
|   |   |   |
|
|   |
|
|
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |   | . | . | . | . |   |   |   |   |
Template Sequence |   |
P | K | E | D | W | C | V | F | A | S | G | V | V | P | A | I | S | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
A | X | V | R | Q | F | T | S | P | G | D | Q | I | L | V | Q | E | P | V | Y | N | X | F | Y | S | V | I | E | G | N | G | R | R | V | I | S | S | D | L | I | Y | E | N | S | . |
. |
. |
. |
K | Y | S | V |
Template Known Secondary structure |   |
|
| G | G | G |  |  |  |  | S |
|  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  | S |
| T | T |
|  |  |  |  |
| S | S |
|
| T |  |  |  |  |  |  |  | T | T | T |
|  |  |  |  |
|
|
|  |  |  | T | T | . | . | . | . |  |  |  |
|
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
| . | . | . | . |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
82 | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
. | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | |
|
|
|
. | . | . | . |
  |
  |   |
247 | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | P | L | T | D | D | P | R | F | L | Q | A | T | E | A | V | V | L | T | R | V | D | D | Y | P | M | Q | Q | L | L | R | A | V | V | D | K | H | A | L | L | A | H |
Query Conservation |   |
  |   |
|   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|   |   |   |   |   |   |   |
|   |   |
|
|   |   |   |   |   |   |   |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|
|
|
|   | . | . | . | . |   |   |   |   |   |   |   |   |   |
|
Template Sequence |   |
N | W | A | D | L | E | E | K | L | A | T | P | S | V | R | X | X | V | F | C | N | P | H | N | P | I | G | Y | . |
. |
. |
. |
A | W | S | E | E | E | V | K | R | I |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  | T | S | T | T |  |  |  |  |  |  |  | S | S | B | T | T | T | T | B | . | . | . | . |
|
|
|  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  | . | . | . | . |  |
|
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
147 | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | |
|
|
|
. | . | . | . | . | 180 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|