Return to main results Retrieve Phyre Job Id

Job DescriptionP39399
Confidence96.27%DateThu Jan 5 12:00:34 GMT 2012
Rank51Aligned Residues90
% Identity8%Templated3broa1
SCOP infoDNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain MarR-like transcriptional regulators
Resolution2.04

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   106...110.........120.........130.........140...... ...150.........160.........170.........180..
Predicted Secondary structure 

















...






Query SS confidence 








































. . .



































Query Sequence  PGETFSELQLARAAGVSPVVVREYLLKFGRYNLIHSEKRGQ. . . WSMKQFDQSYAEQLFELREMLETHSLQHFLNLPDHD
Query Conservation 

  


  

   










  
   


      
...  
         

 
 
  

  
   
       
Alig confidence 








































...








.

























Template Conservation       
  


  
     


  
  
   
 
 
     
 
   
 

  .
                     

 
Template Sequence  KNKEVLQRDLESEFSIKSSTATVLLQRXEIKKLLYRKVSGKDSRQKCLKLTKK. ANKLETIILSYXDSDQSQXTSGLNKE
Template Known Secondary structure  TTS

BT

TTS
SS
TTS
.TTTTT

Template Predicted Secondary structure 




















.



Template SS confidence 















































































   44.....50.........60.........70.........80.........90...... ...100.........110.........120..
 
   183......190......
Predicted Secondary structure 
Query SS confidence 













Query Sequence  PRWLQAKTMLERHR
Query Conservation      
   
     
Alig confidence 













Template Conservation 
       
 
  
Template Sequence  EVVFLEKILKRXIE
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 













   123......130......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions