Job Description P39399 Confidence 92.09% Date Thu Jan 5 12:00:34 GMT 2012 Rank 164 Aligned Residues 97 % Identity 7% Template d1sd4a_ SCOP info DNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain Penicillinase repressor Resolution 2.00

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		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.					120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.																								.																											.	.	.
Query SS confidence																									.	.	.	.																								.																											.	.	.
Query Sequence		T	M	I	N	Q	R	Q	L	R	P	G	E	T	F	S	E	L	Q	L	A	R	A	A	.	.	.	.	G	V	S	P	V	V	V	R	E	Y	L	L	K	F	G	R	Y	N	L	I	H	S	E	.	K	R	G	Q	W	S	M	K	Q	F	D	Q	S	Y	A	E	Q	L	F	E	L	R	E	M	L	E	.	.	.
Query Conservation																									.	.	.	.																								.																											.	.	.
Alig confidence													.												.	.	.	.																								.																											.	.	.
Template Conservation													.
Template Sequence		W	D	V	X	N	I	I	W	D	K	K	.	S	V	S	A	N	E	I	V	V	E	I	Q	K	Y	K	E	V	S	D	K	T	I	R	T	L	I	T	R	L	Y	K	K	E	I	I	K	R	Y	K	S	E	N	I	Y	F	Y	S	S	N	I	K	E	D	D	I	K	X	K	T	A	K	T	F	L	N	K	L	Y
Template Known Secondary structure											S	S	.	S												T	T	S																	T	T	S							T	T								S
Template Predicted Secondary structure													.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
						169	170	.	.	.	.	.	.	.	.			.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure		.	.	.	.											.	.
Query SS confidence		.	.	.	.											.	.
Query Sequence		.	.	.	.	T	H	S	L	Q	H	F	L	N	L	.	.	P	D	H	D	P	R	W	L	Q	A	K	T	M	L	E	R
Query Conservation		.	.	.	.											.	.
Alig confidence		.	.	.	.											.	.
Template Conservation
Template Sequence		G	G	D	X	K	S	L	V	L	N	F	A	K	N	E	E	L	N	N	K	E	I	E	E	L	R	D	I	L	N	D	I
Template Known Secondary structure		T	T												T	T		S
Template Predicted Secondary structure
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions