Job Description P39399 Confidence 95.32% Date Thu Jan 5 12:00:34 GMT 2012 Rank 84 Aligned Residues 66 % Identity 23% Template c3pqkD_ PDB info PDB header:transcription Chain: D: PDB Molecule:biofilm growth-associated repressor; PDBTitle: crystal structure of the transcriptional repressor bigr from xylella2 fastidiosa Resolution 2.09 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																																																		.
Query SS confidence																																																		.
Query Sequence		Q	V	I	D	D	M	A	R	G	H	I	P	S	P	L	P	S	Q	S	A	L	A	E	M	Y	N	I	S	R	T	T	V	R	H	I	L	S	H	L	R	E	C	G	V	L	T	Q	V	.	G	N	D	Y	V	I	A	R	K	P	D	H	D	D	G	F	A	C	T	T	A	S	M	S	E	Q	N	K	V	F	E
Query Conservation																																																		.
Alig confidence													.	.	.	.	.																																	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		X	L	V	C	T	L	V	E	G	E	F	.	.	.	.	.	S	V	G	E	L	E	Q	Q	I	G	I	G	Q	P	T	L	S	Q	Q	L	G	V	L	R	E	S	G	I	V	E	T	R	R	N	I	K	Q	I	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									T			B	.	.	.	.	.										T			T	T												T	T	S						S	S	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure													.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.						50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	F	F	T	M	I	N	Q	R	Q	L	R	P	G	E	T	F	S	E	L	Q	L	A	R	A	A	G	V	S	P	V	V	V	R	E	Y	L	L	K	F	G	R
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	R	L	T	E	A	K	A	A	Q	L	V	N	A	L	Y	T
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																												89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions