Job Description P39399 Confidence 93.35% Date Thu Jan 5 12:00:34 GMT 2012 Rank 140 Aligned Residues 85 % Identity 15% Template c2zmeB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:vacuolar protein-sorting-associated protein 36; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex Resolution 2.90 Å

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		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure																				.					.
Query SS confidence																				.					.
Query Sequence		I	S	R	T	T	V	R	H	I	L	S	H	L	R	E	C	G	V	.	L	T	Q	V	.	G	N	D	Y	V	I	A	R	K	P	D	H	D	D	G	F	A	C	T	T	A	S	M	S	E	Q	N	K	V	F	E	Q	A	F	F	T	M	I	N	Q	R	Q	L	R	P	G	E	T	F	S	E	L	Q	L	A	R
Query Conservation																				.					.
Alig confidence																				.					.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Sequence		L	S	P	E	D	L	V	N	A	C	K	M	L	E	A	L	K	L	P	L	R	L	R	V	F	D	S	G	V	M	V	I	E	L	Q	S	H	K	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	M	V	A	S	A	L	E	T	.	V	S	E	K	G	S	L	T	S	E	E	F	A	K
Template Known Secondary structure													T	T	G	G	G	T		S							T	T								S	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.					S		B
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320																	.	.	.	.	.	.	.	.	.	330		.	.	.	.	.	.	.	.	.	340	.	.	.	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	G	V	S	P	V	V	V	R	E	Y	L	L	K	F	G	R	Y	N	L	I	H	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	V	G	M	S	V	L	L	A	K	E	R	L	L	L	A	E	K	M	G	H	L	C	R
Template Known Secondary structure				T																	T	S
Template Predicted Secondary structure
Template SS confidence
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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